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From the Department of Ophthalmology, Duke University Medical Center, Durham, North Carolina.
| Abstract |
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METHODS. Two pairs of anterior segments of normal human eyes from postmortem
donors were placed in culture and perfused 24 hours at constant flow (3
µl/min). After reaching baseline, the flow of one eye from each pair
was raised to obtain an incremental pressure (
P) of 50 mm Hg for 6
hours. The anterior segments were then quickly frozen in liquid
nitrogen, and their TMs were dissected for RNA extraction. SMART cDNA
libraries were generated from control and high-pressure human TM RNAs
and hybridized to sets of identical high-density cDNA gene arrays.
These arrays contained 18,376 human expressed sequence tags (ESTs),
corresponding to both characterized and unknown genes. Differentially
expressed genes were identified by different-intensity hybridization
signals and confirmed by semi-quantitative polymerase chain reaction.
RESULTS. Eleven genes were found to be consistently upregulated in the human TM
by elevated IOP: interleukin-6, preprotachykinin-1, secretogranin-II,
cathepsin-L, stromelysin-1, thymosin-ß4,
-tubulin,
B-crystallin, glyceraldehyde-3-phosphate dehydrogenase,
metallothionein and Cu/Zn superoxide dismutase. The products of these
genes are involved in vascular permeability, secretion, extracellular
matrix remodeling, cytoskeleton reorganization, and reactive oxygen
species scavenging.
CONCLUSIONS. Elevated IOP induced specific upregulation of 11 physiologically relevant genes. On the basis of their known activities, the products of each of these genes might predict homeostatic mechanisms similar to those involved in the regulation of blood vessel permeability. We hypothesize that similar mechanisms might be involved in regulating flow through Schlemms Canal endothelium.
| Introduction |
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Although most aqueous humor probably flows through the TM by a mechanism not dependent on cellular energy,6 7 cells of the outflow pathway could modulate the rate of this flow through a variety of mechanisms. These would include (1) phagocytosis of debris that could cause mechanical blockage,8 9 10 (2) secretion of proteins and enzymes that could alter the composition of the ECM,5 (3) changes in cytoskeletal organization that could affect cell shape and thus influence the dimensions or direction of the outflow pathway for aqueous humor,11 12 and/or (4) release of factors that could influence the permeability of the inner walls of the SC.
To maintain a physiological IOP in the living eye, it would be desirable for the TMSC system to have in place feedback mechanisms capable of altering outflow resistance. Such mechanisms could include both sensing mechanisms for differential pressure or fluid distortion, and response mechanisms that would be able to send signals to neighboring cells. However, although there is morphologic evidence for the possible presence of mechanoreceptors at nerve endings in adjacent tissues,13 14 there is very little information at the molecular level of possible homeostatic responses to changes in IOP.
One way to begin understanding the possible molecular mechanisms that could regulate IOP would be to study those genes that are upregulated in the outflow pathway when the tissue is subjected to a high-IOP insult. We applied an exponential polymerase chain reaction (PCR)-gene array hybridization strategy, which is among the current techniques available to study such differential gene expression. To our knowledge no such study has been performed on intact human TM tissue. One of the reasons for this lack of data has been the technical difficulty associated with the small size of the human TM. To date, this problem has precluded the construction of good human TM cDNA libraries and the characterization of relevant genes.
We have recently developed in our laboratory a strategy that allows us to perform the analysis of differential gene expression in very small tissue samples.15 In this study, we have applied these new techniques to examine the pattern of genes upregulated by a high-IOP (HIOP) stimulus to the human TM, lasting for 6 hours in the perfused human anterior segment organ culture.16 17 18
Our results show that changes in IOP do induce changes in gene expression in the human TM. Some of these TM genes, activated by an increase in IOP, code for proteins involved in regulation of inflammation, secretion, ECM digestion, cytoskeleton organization, and responses to oxidative and other types of stresses. Genes involved in similar functions have been shown to be very important in the regulation of permeability of vascular endothelium.
| Methods |
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P of 50 mm Hg for a period of 6 hours. The flow of the contralateral
eye, which served as the control, was maintained at 3 µl/min. At the
end of the experiment, anterior segments were frozen in liquid nitrogen
within 2 minutes of turning off the perfusion pumps and stored at
-70°C for RNA extraction.
RNA Extraction and Construction of Exponential cDNA Probes
RNA extraction and construction of cDNA libraries were performed
basically as detailed in Gonzalez et al.15
Briefly, TM
tissues were obtained under a dissecting microscope from the frozen
anterior segments before the complete thawing of the specimen. The
isolated tissue was placed into a 1.5-ml microcentrifuge tube
containing 350 µl of guanidine thiocyanate buffer, homogenized with a
disposable pestle, and loaded onto a QIAshredder column (QIAGEN,
Chatsworth, CA). Extraction continued using the RNeasy kit (QIAGEN),
and RNA molecules selectively bound to the silica gel base were eluted
with 30 µl RNAase-free water.
One fourth of the RNA sample was lyophilized and used as template for the construction of the exponential cDNA libraries as described.15 Briefly, the total RNA was reverse-transcribed directly using the SMART PCR cDNA synthesis kit (Clontech, Palo Alto, CA) according to the manufacturers protocol. Annealing was conducted using a modified oligo(dT) at 70°C for 2 minutes in the presence of the SMART II oligonucleotide in total volume of 5 µl. The reaction was followed by the addition of Superscript II (200 units), RNase H- reverse transcriptase (RT) (Gibco-BRL, Gaithersburg, MD) and incubated at 42°C for 1 hour. The reaction was stopped by adding 40 µl of Tris-EDTA buffer and heating at 72°C for 7 minutes (final volume, 50 µl). Representative double-stranded cDNAs were then generated by exponential PCR amplification. The optimal number of cycles for each sample was determined by analyzing the PCR products of a series PCR amplification using different numbers of cycles.
Two microliters from the 50-µl single-stranded cDNA stocks were amplified in 100-µl reactions using the SMART PCR primer and the predetermined exponential number of cycles. Amplified SMART cDNAs from the control and high-pressure TMs were purified using the QIAquick PCR Purification kit (QIAGEN) and labeled by random priming (Ready To Go DNA labeling kit; Pharmacia Biotech, Piscataway, NJ).
Differential Hybridization to Human cDNA Arrays
Approximately 1 to 3 x 108 cpm from
control and HIOP TM cDNAs were hybridized to identical membranes
containing high-density human cDNA arrays. The membrane arrays used
here were the human gene discovery array (GDA) version 1.2
(Genome Systems, St. Louis, MO), which contain 18,376 nonredundant
human cDNA clones from the I.M.A.G.E. collection.19
Hybridizations were performed at 42°C in a 10-ml solution of 50%
deionized formamide, 6x sodium saline citrate (SSC), 5x Denhardts,
and 1% sodium dodecyl sulfate (SDS) as previously
described.15
Ten milligrams of sheared salmon sperm DNA
(Research Genetics, Huntsville, AL) and 50 µg of Cot1 DNA (Gibco-BRL)
were used as carriers in all hybridization steps. Membrane filters were
washed four times in 500 ml of 2x SSC, 1% SDS at 65°C for 20
minutes and exposed to x-ray film (Eastman Kodak, Rochester, NY) at
4°C. The time of exposure of the membranes was adjusted to obtain the
same general intensity in both of them.15
Identification of Differentially Expressed Genes
Within one small square of the GDA filter grid, Genome Systems
spotted each individual clone twice. Positive hybridization signals
corresponding to true positive clones are those where the intensity of
the two spots corresponding to the same gene are equivalent. Comparison
between the same clone in the two membranes was done taking into
account the overall positive signal of the membrane. Identification of
each specific clone was conducted by matching the spot location in the
membrane filter grid with the Genome Systems data bank
(http://www.genomesystems.com/GDA/geneID.html).
Confirmation of the Differentially Expressed Genes
Differential expression of the genes selected by hybridization to
the arrays was verified by semi-quantitative PCR of the control and
HIOP cDNAs. Target genes were compared from the two conditions using
primers specifically designed to anneal with sequences located in
different exons.
PCR reactions were performed in a Perkin Elmer, GeneAmp PCR System 2400 with advantage cDNA polymerase mix (Clontech, Palo Alto, CA). Amplifications were conducted using a program with a precycle of 94°C for 15 seconds, cycles of 94°C for 15 seconds, 60°C for 30 seconds, 72°C for 30 seconds, and an extension of 72°C for 7 minutes. Normalization of the SMART cDNA samples from normal and HIOP TMs was carried out with two genes that did not show differences of hybridization in the cDNA arrays: hypoxanthine phosphororibosyl transferase (HPRT) and major histocompatibility complex class I (MHC-I).15 The selection of internal standards that do not show changes in expression in the arrays is particularly critical, because the use of some other genes frequently chosen as controls could be misleading. Thus, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), a commonly used internal standard, has been shown to be upregulated in a variety of experimental conditions.20 Amplification of each of the differentially expressed genes was performed at exponential phase (number of cycles determined for each tested gene) using the normalized template values. PCR products were analyzed in 1.5% Super AcrylAgarose (DNA Technologies Inc., Gaithersburg, MD) gels containing 0.25 µg/ml of ethidium bromide. Images of the gels were captured with a Progress-Research-3012 digital camera (Konitron Elektronik, Eching, Germany) and quantified using the Image Analysis Software (NIH). Identification of the analyzed PCR products was confirmed by DNA sequencing. Each amplified fragment was cloned into the pCR2.1-TOPO cloning vector (Invitrogene, Carlsbad, CA) and sequenced with an M13 universal reverse primer.
Table 1 summarize the sequences and sources of all primers used in this study as well as the expected size of the amplified products of the induced genes.
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| Results |
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Exponential cDNAs Libraries
Analytical amplifications of the first-strand cDNA from normal and
HIOP TM tissues were conducted as described in the Methods section. The
exponential phase was determined in the gel by the disappearance of
distinct bands and increased high-molecular-weight smear in the lanes
corresponding to the next set of cycles. Figure 1
shows the results of the step-wise amplification of both cDNA samples
from individual 2. The number of PCR cycles selected (exponential
phase) were 20 and 17, respectively, for the control and HIOP from the
first individual and 21 for both eyes in the second (shown in Fig. 1
).
After this number of cycles, the cDNA molecules corresponding to the
most abundant mRNA populations have ended their exponential growth.
Preparative exponential libraries were then obtained from both
individuals at the same number cycles as that of the analytical sample.
|
-tubulin, are involved in
the organization of the cells cytoskeleton. The last four upregulated
genes encode
B-crystallin, GAPDH, metallothionein, and
Cu/Zn-dependent superoxide dismutase (Cu/Zn SOD), all proteins known to
be induced by different types of stresses. Some of the spots that
showed different hybridization corresponded to different ESTs from the
same gene, reaffirming the true induction of those genes. In the
membranes, there were 9 different EST spots corresponding to
metallothioneins, 2 for the
-tubulin, and 3 for the
B-crystallin.
The results of the hybridization of the SMART cDNAs from the normal and
HIOP TMs to the gene arrays are shown in Figure 2
. The membranes shown correspond to samples obtained from the anterior
segment cultures from donor 1, a 69-year-old, white man. Reproducible
patterns were obtained with the cDNA from donor 2, a 92-year-old white
woman, subjected to the same pressure insult (not shown). Figure 2A
shows the fields containing HPRT and MHCH-I, two nondifferentially
expressed housekeeping genes used as internal controls. Figure 2B
shows
the partial six-square fields of gene membrane arrays containing the
hybridization spots corresponding to the 11 induced genes. With the
exception of the
-tubulin and
B-crystallin genes, the small
squares containing the spots of the upregulated or equally expressed
genes are located in the central square of each depicted field.
Positions of the double spots corresponding to each gene are shown in
Figure 2C .
|
The differential expression between both conditions was verified by semi-quantitative PCR on normalization of the amount of template present in the HIOP and normal pressure SMART cDNA samples. Normalization was accomplished by using primers from housekeeping HPRT and MHC-I genes (same intensity in the hybridization membranes) and for the MHC-I as follows: (a) cDNAs from control and HIOP TMs were diluted 10 times and amplified (1 µl) at different number of cycles with the MHC-I primers; (b) resulting PCR products were analyzed by gel electrophoresis and the cycle number at which amplifications were exponential for both conditions was determined (Fig. 3A ); (c) 1 µl from a 1/10 dilution of the HIOP and 1 µl from serial dilutions (1/10 to 1/60) of the normal pressure cDNAs were amplified at the determined exponential cycle number; and (d) resulting PCR products were analyzed by gel electrophoresis (Fig. 3B) , and band intensities were compared by densitometry. Final normalization values of the templates were 1:6 (control:HIOP) for individual 1 and 5:1 (control:HIOP) for individual 2. For corroboration, template normalization was repeated using HPRT-specific primers in a similar manner (not shown). Results were identical, as were the ones obtained for MHC-I.
|
, ß, and
.21
The transcript
codes for the substance P (SP) precursor, whereas the ß and
forms code for the precursors of substance K (neurokinin
A).22
All three products were found to be present in the
TM. Of the three, the PPT-A ß transcript was the more abundant in
both individuals (approximately 80% of the total PPT-PCR product),
whereas PPT-A
was approximately 20%, and PPT-A
, though present,
was hardly visible in the ethidium bromidestained gels. Given the
high similarities of the 9 metallothioneins identified in the
membranes, we also chose, for this gene, primers that would amplify
undistinctively all the isoforms. Because there is not clear evidence
on what the differences in function between them may be, we made no
attempt to further characterize the different isoforms present in the
TM. Figure 4 shows the final results of the semi-quantitative PCR in the normal and HIOP cDNAs of the two individuals analyzed. The relative level of induction of each gene was different in both individuals examined, but importantly, all 11 genes analyzed were upregulated with pressure in both of them.
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| Discussion |
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B-crystallin and fibronectin are down- and upregulated,
respectively, in cultured cells, whereas the expression of others, such
as elastase-IIIA and osteopontin, completely disappear.15
In addition, all mechanical forces acting on the outflow pathway
tissue23
24
are not present in traditional cell culture
techniques. Recent studies have applied mechanical stretch to human TM
cells.25
However, in contrast to cultured cells, the organ
culture model used in these studies18
26
preserves the
architecture of the outflow tissue and keeps intact potential sites for
differential pressure effects. The different layers of the TM and SC
that may be altered by mechanical stress are maintained.
In this study, we have constructed cDNAs libraries from the TMs of
paired normal and HIOP perfused human anterior segments. We have
confirmed our results by repeating the library construction and
screening in a second, unrelated individual. Similar mechanical
stresses were likely applied to the experimental eyes of each of the
two pairs studied (
DPs = 48.8 mm Hg for the first and 50.7 mm
Hg for the second), and the described 11 genes were induced in both
cases. We also observed that the level of induction of these genes was
different for each of the individuals studied. That result is not
unexpected because in studies with human tissues, individual variations
due to, for example, age, race, and sex, are unavoidable. The
comparison of cDNA libraries from normal and HIOP in paired eyes from
the same individual does allow us, however, to identify and distinguish
relevant inductions.
The first two of the genes upregulated with elevated pressure in the TM, IL-6 and SP, are well-known markers of inflammation.27 28 One of the important actions of these two molecules is their ability to increase vascular permeability in vitro29 30 31 and in vivo.32 33 34 This effect may be produced by mechanisms such as the induction of intercellular gaps,31 34 increased number of pinocytic vesicles and vacuoles,35 and release of ECM proteinases.36 37 IL-6 can be induced by ROS,38 cyclic adenosine monophosphate (cAMP),39 forskolin,40 transforming growth factor beta41 and bradykinin,42 and it is noteworthy that most of these agents also influence aqueous humor outflow facility.42 43 44 45 46 47 SP can be induced by noxious stimuli and in turn promote the release of prostaglandin E2,48 inflammatory cytokines (including IL-6),49 and superoxide.50 Initially considered to be exclusively of neuronal origin,51 SP has been subsequently identified in a variety of nonneuron cell types.52 53 54 In the eye, SP has been described inside the nerves of ocular tissues, including those of the TM.55 56 57 Because our organ culture tissue preparation would exclude neuronal bodies, our results suggest a potential endogenous production of this peptide by TM cells. Interestingly, human umbilical vein endothelial cells release SP in response to increased flow.58
Given the functions of IL-6 and SP in the vascular system, it is very attractive to speculate that these two molecules might play a similar role in relation to SC. The known embryological vascular origin of SC59 60 61 62 might support such a hypothesis. We postulate that, in response to elevated IOP, the cells of the TM might release factors to which the SC could respond in a way similar to other vascular cells. Permeability would be momentarily increased and physiological IOP would be restored. This SC response might have been so programmed during morphogenesis.
Another induced gene, secretogranin-II, codes for a protein involved in the regulation of the secretory pathway.63 Secretogranin-II was initially described in the anterior pituitary64 and later was shown to be present throughout the endocrine and nervous systems.65 The specific functions of secretogranin and its derived neuropeptide secretoneurin66 are not clear. A potential role in the regulation of aqueous humor outflow has been proposed, based on secretogranin expression in the ciliary epithelium and the presence of secretoneurin in the aqueous humor.67 Our results on the increase in secretogranin-II mRNA in the TM cells in response to IOP could simply represent an activation of the secretory activity of these cells. This enhancement could influence the release of other substances, such as ECM proteinases or signaling molecules such as SP and IL-6.
Remodeling of ECM by the secretion of matrix metalloproteinases (MMPs) (including cathepsin-L and stromelysin-1) has been known to play a major role in regulating vascular permeability in other systems. For instance, invading tumor cells upregulate expression of MMPs to degrade ECM synthesized by vascular endothelial cells,68 and connective tissue cells secrete stromelysin to regulate protein permeability.69 In the eye, MMPs and their inhibitors are present in aqueous humor,70 and perfusion of human anterior segments with MMPs produces an increase in outflow facility.71 There is also a reported excess accumulation of ECM components in glaucomatous eyes4 as well as a reported increase in stromelysin activity after laser trabeculoplasty.72 Our finding that stromelysin and cathepsin are upregulated by HIOP potentially supports the concept that these MMPs might be involved in aqueous humor outflow resistance regulation.
The induction of thymosin-ß4 and
-tubulin
reinforces the potential importance of the cytoskeleton on the
regulation of IOP. Thymosin is an actin-binding protein that triggers
destabilization of stress fibers,73
and
-tubulin is a
component of microtubules. Changes in actin and tubulin have been
associated with changes in cell contractility.74
75
Our
results might suggest that in response to HIOP, TM cells might decrease
contractility and tension (relax). Several studies have shown that
cytoskeletal-related drugs that induce either relaxation or contraction
are associated with an increase in outflow
facility.11
76
77
Perhaps there are many potential
regulatory mechanisms relating to temporal changes in cellular tension.
An alternative explanation to a potential influence in IOP by the
induction of these genes, would be that an increase in microtubule
formation might also facilitate cell secretion78
and
thereby contribute to remodeling of the ECM or release of other
extracellular enzymes. In this regard, it may be important that
TIGR/MYOC, a protein genetically linked to glaucoma,79
has
been localized to cell vesicles80
and therefore may be
involved in secretion.
The last set of HIOP upregulated genes,
B-crystallin, GAPDH,
metallothioneins, and Cu/Zn SOD, have all been reported to be induced
by different types of stress in several systems.
B-Crystallin,
localized in the juxtacanalicular region, is induced after heat shock,
oxidative stress,81
82
and mechanical stretching of
primary TM cells.83
GAPDH is commonly used as mRNA
internal standard with the assumption that its expression levels remain
relatively constant in different experimental conditions. However,
recent data demonstrated upregulation of GAPDH in different tissues in
response to a variety of stress conditions. In particular, it has been
shown to be induced by oxidative stress in endothelial
cells.84
Metallothioneins (MTs), cysteine-rich proteins
with metal-binding activity, are inducible by metals, glucocorticoids,
inflammatory stress signals, and oxidative stress.85
86
87
88
Superoxide dismutase (Cu/Zn SOD) expression also responds to oxidative
stress.89
The activation of these genes in the
TM90
91
could be an indication of the importance of
regulating the TM redox state. It is also noteworthy that upregulation
of redox-sensitive genes has been reported in human vascular
endothelial cells exposed to oscillatory and shear
stress.92
Different types of mechanical stress activate both prooxidant and antioxidant compensatory genes. Thus, cyclic strain93 94 and shear flow stresses92 95 induce the production of ROS that may subsequently act as signaling molecules and influence cell adhesion.96 The cyclic strain is particularly interesting, because this type of stress is potentially similar to the one applied to the TM in situ in our studies. It is conceivable that HIOP-induced TM cells would respond in a similar manner and generate ROS. ROS (superoxide free radicals and H2O2) also mediate the production of MMPs during reorganization of cell shape97 and cell retraction with formation of intercellular gaps.98 To this effect, perfusion of low concentrations of H2O2 in presence of a catalase inhibitor has been reported to produce an increase in outflow facility.99
In summary, we have found that a given increase in IOP (
DP
50 mm
Hg, for 6 hours) in a perfused human anterior segment model, can induce
selective upregulation of 11 physiologically relevant TM genes (IL-6,
PPT-A, secretogranin, cathepsin, stromelysin, thymosin,
-tubulin,
B-crystallin, GAPDH, MTs, and Cu/Zn SOD). Based on their known
activities, the products of each of these genes would be predictive to
have a potential effect in aqueous humor outflow resistance. These
genes involved in vascular permeability, secretion, degradation of ECM,
reorganization of the cytoskeleton, and ROS scavenging all represent
potential candidates for the regulation of IOP at different levels.
Their coordinate induction provides a possible mechanism to maintain
homeostasis of the outflow pathway system. Given the vascular nature of
SC, we hypothesize that some of these mechanisms may have evolved from
those that regulate the permeability of the vascular endothelium. We
believe that these and other yet to be characterized genes that exhibit
differential regulation in the outflow pathway may provide new insights
into the potential regulation of resistance to aqueous humor outflow in
the human eye.
| Acknowledgements |
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| Footnotes |
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Submitted for publication June 4, 1999; revised August 26, 1999; accepted September 15, 1999.
Commercial relationships policy: N.
Corresponding author: Teresa Borrás, Duke University Medical Center, Wadsworth Building, Erwin Road, Box 3802, Durham, NC 27710. borra001{at}mc.duke.edu
| References |
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