(Investigative Ophthalmology and Visual Science. 2001;42:2419-2425.)
© 2001
by The Association for Research in Vision and Ophthalmology, Inc.
Induction of an Aging mRNA Retinal Pigment Epithelial Cell Phenotype by Matrix-Containing Advanced Glycation End Products In Vitro
Shigeru Honda1,
Behnom Farboud1,
Leonard M. Hjelmeland1,2 and
James T. Handa1
1 From the Departments of Ophthalmology and
2 Molecular and Cellular Biology, University of California, Davis.
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Abstract
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PURPOSE. To determine an extensive mRNA phenotype of the established RPE cell
line ARPE-19 when grown on a matrix modified by advanced glycation end
products (AGEs).
METHODS. Growth Factor Reduced Matrigel (Collaborative Biomedical Products,
Bedford, MA) was nonenzymatically glycated with glycolaldehyde.
ARPE-19 cells were seeded on both AGE-Matrigel and Matrigel and grown
to confluence, and serum was withdrawn for 3 days. RNA was extracted,
and microarray analysis was performed to characterize the genes, which
are altered by a matrix modified by AGEs. Gene expression changes were
confirmed by RT-PCR/Southern and Northern blot analysis. Apoptosis was
measured by annexin V/propidium iodide labeling.
RESULTS. Clusters of genes with altered expression were found related to cell
differentiation, growth factors that regulate the RPE cell and basement
membrane, and apoptosis. RT-PCR/Southern and Northern blot analysis
confirmed the expression patterns of selected genes, and flow cytometry
showed increased annexin V/propidium iodide-labeled cells when grown on
AGE-Matrigel.
CONCLUSIONS. Microarray analysis identified clusters of genes that could promote an
aging RPE phenotype in vitro induced by a matrix modified with
AGEs.
 |
Introduction
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Advanced glycation end products (AGEs) are a heterogeneous
group of structures formed over time by nonenzymatic Maillard reactions
between a proteins primary amino group and carbohydrate-derived
aldehyde groups. AGEs have been implicated in a variety of age-related
diseases such as cataract, Alzheimers disease, and
atherosclerosis.1
2
3
Our laboratory recently quantified an
age-dependent increase of AGEs in human Bruchs membranes and
identified AGEs in basal deposits and drusen.4
5
We also
determined that physiological doses of the AGE pentosidine upregulated
PDGF-B chain in RPE cells, which suggests that AGEs can influence the
RPE phenotype.6
Although providing the rationale for
further investigation, this study was limited by characterizing the
expression of only one gene. We hypothesize that AGEs induce an aging
mRNA phenotype to the RPE that would promote degeneration to the
RPE-Bruchs membrane complex. Our long-range goal is to identify an
extensive mRNA phenotype of the RPE in health and aging in vivo and to
determine the subset of genes that are regulated by AGEs. The emergence
of cDNA microarrays allows for the simultaneous examination of the
expression of large sets of genes that could characterize the molecular
events during aging and define a role for AGEs during RPE aging. As
initial work to address our hypothesis, we used microarray analysis to
characterize an extensive mRNA phenotype of the established,
nonimmortalized ARPE-19 cell line when grown on matrix containing AGEs.
 |
Materials and Methods
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Nonenzymatic Glycation of Matrigel
A 1:16 dilution of Growth Factor Reduced Matrigel
(Collaborative Biomedical Products, Bedford, MA), which in preliminary
experiments did not impair the proliferation of ARPE-19 cells, was
incubated for 4 hours at 37°C with glycoaldehyde (50 mM; Sigma, St.
Louis, MO) in 0.2 M phosphate buffer using a modification of a
previously published protocol.7
Control Growth Factor
Reduced Matrigel was treated for 4 hours with 0.2 M phosphate buffer
without glycolaldehyde. The mixtures were then rinsed extensively with
Dulbeccos phosphate-buffered saline (PBS). A sample was analyzed for
fluorescence with a Hitachi F-2000 fluorescence spectrometer using 370
nm excitation/440 nm emission to estimate the quantity of AGEs, a
typical indicator of AGE formation.8
In this study, we
designate "AGE-MG" to indicate glycolaldehyde-treated Growth Factor
Reduced Matrigel and "MG" for Growth Factor Reduced Matrigel.
Cell Culture
All experiments used the ARPE-19 established but nonimmortalized
human RPE cell line. This cell line exhibits significant differentiated
characteristics such as cobblestone morphology, apical microvilli,
basolateral infoldings, and expression of CRALBP and
RPE-65.9
The routine maintenance of ARPE-19 has been
previously described.6
Preliminary experiments, such as
the work of Haitoglou et al.,10
revealed that the
attachment of cells onto AGE-matrix is reduced by 25%. To obtain equal
confluency for experiments, ARPE-19 cells were seeded in T-75
cm2 flasks at a density of
80,000/cm2 when plated on MG and
100,000/cm2 when plated on AGE-MG and grown for 1
day in Dulbeccos modified Eagles medium/Nutrient mixture F12 with
15 mM Hepes buffer (DMEM/F12; Gibco BRL, Gaithersburg, MD) + 10% fetal
bovine serum (FBS; UBI Upstate, Lake Placid, NY), 0.348% additional
sodium bicarbonate, 2 mM L-glutamine solution (Gibco BRL),
at 37°C in 10% CO2. Cells were then rendered
quiescent in DMEM/F12 + 1% bovine albumin (BSA fraction V; Sigma).
RNA Extraction for Microarray Analysis
Total RNA was extracted using the RNeasy Midi kit (Qiagen Inc.,
Valencia, CA) twice according to the manufacturers recommendations
and treated with DNase (Amplification grade; Gibco BRL).
PolyA+ RNA was isolated with the Oligotex mRNA
kit (Qiagen Inc.) after the quality of total RNA was assessed by
subjecting a sample of RNA to 1% agarose gel electrophoresis and to
verify that it was free of DNA contamination by PCR amplification using
protein kinase 1 and 2 primers.
Microarray Analysis
The Atlas Human cDNA expression (588 genes) and Human Cell
Interaction (265 genes) Microarrays (Clontech Laboratories, Inc., Palo
Alto, CA) were used according to the manufacturers protocol. Briefly,
32P-labeled first-strand cDNA probes were
synthesized from 1 µg polyA+ RNA using
Superscript II RNase H- (Gibco BRL, Grand Island, NY) in the
master mix, which included [
-32P]dATP.
Probes were purified from unincorporated
32P-labeled nucleotides and small cDNA fragments
by column chromatography, and the incorporated
32P into the probe was verified by scintillation
counting. After prehybridizing with ExpressHyb (Clontech) with sheared
salmon testes DNA for 30 minutes at 65°C, radiolabeled cDNA probes at
a final probe concentration of 0.5 to 2 x
106 cpm/ml were hybridized to the array at 68°C
overnight. The arrays were washed once with 2x SSC, 1% SDS solution
for 30 minutes at 68°C, and twice with 0.1x SSC, 0.5% SDS at 68°C
for 30 minutes. The relative abundance of the signals for each gene was
quantified by phosphorimager analysis using ImageQuant software
(Molecular Dynamics, Inc., Sunnyvale, CA). Experiments were repeated
once.
Microarray Quantification and Statistical Analysis
The intensity of each gene on the array was quantified using a
previously published method.11
Briefly, the signal
intensity of each cDNA spot was corrected by subtracting the immediate
surrounding background. The corrected intensities were normalized for
each cDNA as follows: (corrected intensity/75th percentile value of the
intensity of the mean value of the entire array) x1000. To determine
nonspecific hybridization, 75th percentile values were calculated from
the individual averages of an "irrelevant" set of cDNAs on the
array. The values were then analyzed using the Cluster and TreeView
software (http://rana.stanford/software) using a previously published
method.12
Northern Blot Analysis
Northern blot analysis for all samples was performed with
random-primed 32P-labeled cDNA probes using our
previously published protocol.6
Total RNA (10 µg) was
subjected to electrophoresis through a 1.2% agarose gel in 6.6%
formaldehyde, transferred to a nylon membrane, prehybridized for 2
hours at 42°C, and hybridized by addition of the denatured probe in
50% formamide, 5x SSC, 0.1% sodium dodecyl sulfate (SDS), 5x
Denhardts solution, and 100 µg denatured salmon sperm DNA at 42°C
for 15 hours. Blots were then washed twice in 0.1x SSC/0.1% SDS at
room temperature for 5 minutes and in 0.1x SSC/0.1% SDS at 50°C for
2 hours, and the signal was quantified by phosphorimager analysis.
Values were normalized using a 28S rRNA probe. Three independent
experiments were conducted. Statistical significance was determined by
the MannWhitney test, with P < 0.05 as significant.
Reverse TranscriptasePolymerase Chain Reaction/Southern Blot
Analysis
First strand cDNAs were produced from total RNA using random
primers and Sensiscript reverse transcriptase (RT; Qiagen) in a 20 µl
RT-mix at 37°C for 75 minutes, as recommended by the manufacturer.
The resulting cDNAs were amplified in a 50 µl volume using
the primers and conditions listed in Table 1
. Polymerase chain reaction (PCR) products were visualized by
agarose gel electrophoresis and ethidium bromide staining. After
Southern blot transfer, confirmation of the PCR reaction fidelity was
assessed using 32P end-labeled internal
oligonucleotide primers as described previously.13
14
Signals were quantified by phosphorimager analysis, and values were
normalized to GAPDH. Statistical significance was assessed by the
MannWhitney test, with P < 0.05 as significant.
Three independent experiments were performed.
Annexin V/Propidium Iodide Assay
ARPE-19 cells were plated at 80,000/cm2 on
MG and 100,000/cm2 on AGE-MG in DMEM/F12 + 10%
FBS for 24 hours and then grown in DMEM/F12 + 1% BSA for an additional
3 to 7 days, as described above. Cells were then trypsinized and rinsed
in 1x binding buffer, and 105 cells were
resuspended in 100 µl 1x binding buffer. Annexin V-FITC (5 µl) and
propidium iodide (10 µl) were incubated in the dark for 15 minutes,
as recommended by the manufacturer (BD PharMingen, Inc., San Diego,
CA). Phosphatidylserine externalization and nuclear propidium iodide
labeling were measured using FACS analysis with excitation wavelength
at 488 nm. Quadruplicate samples of each condition were used for each
experiment, and statistical significance was assessed by the
MannWhitney test, with P < 0.05 as significant.
Three independent experiments were conducted.
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Results
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Morphologic Alterations of ARPE-19 Cells Grown on AGE-MG
Confluent ARPE-19 cells grown under serum withdrawn conditions on
Growth Factor Reduced Matrigel (1:16 dilution) developed a regular
cobblestone morphology that simulates the morphologic appearance of the
RPE in vivo (Fig. 1A)
. When incubated with 50 mM glycolaldehyde for 4 hours, a twofold
increase in the fluorescence of AGE-MG was detected by
spectrophotometric analysis. In contrast, confluent serumwithdrawn
ARPE-19 cells grown on AGE-MG developed a spindly, irregular
"fibroblastic" like morphology after 10 days (Fig. 1B)
.

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Figure 1. Morphologic changes induced by AGE-MG. (A) Confluent ARPE-19
cells grown in DMEM/F12 + 1% BSA for 10 days on Growth Factor Reduced
Matrigel (1:16 dilution) developed regular morphology. (B)
When grown in identical serum withdrawn conditions for 10 days on
Growth Factor Reduced Matrigel (1:16 dilution) treated with
glycolaldehyde, cells appeared "spindle-shaped." Scale bar, 25
µm.
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Altered mRNA Phenotype of ARPE-19 Cells Grown on AGE-MG
Anderson et al.15
have shown that cells grown on
AGE-matrix first show altered gene expression after 3 days in culture.
To determine whether an extensive mRNA phenotype change also developed
along with the above-described morphologic changes by matrix containing
AGEs, the RNA from confluent ARPE-19 cells grown under the identical
conditions described above was assessed for gene expression changes by
microarray analysis 3 days after serum withdrawal. Using an expression
ratio of
2 or
0.5 as an initial filter, a total of 52
genes were differentially regulated by AGE-matrix changes. All the
relative changes in gene expression were between 0.3- to 0.5-fold and
2.0- to 3.1-fold. This study will focus on the expression profiles of
genes that could be involved in cell differentiation, Bruchs membrane
regulation, and early apoptosis. Clusters of genes with fold changes
outside of the initial filter are included in this analysis because of
the inter-related function of specific genes.
Altered Expression of Cell Differentiation Genes by AGEs
Our analysis revealed a cluster of genes whose expression pattern
could alter cell differentiation, which included ligands, receptors,
intracellular signal molecules, and transcription factors from the
inter-related Wingless, Notch, Hedgehog, and EGF receptor signaling
pathways (Table 2)
. For example, the Wingless ligand WNT-10B and early intracellular
mediators disheveled 1 and disheveled 3 were downregulated by ARPE-19
cells grown on AGE-MG. The Notch modulator Manic fringe was
upregulated, whereas the Hedgehog pathway receptor Smoothened was
downregulated in ARPE-19 cells grown on AGE-MG. EGF ligand expression
(kidney EGF precursor, heparin-binding EGF-like growth factor, and
EGF-like cripto protein CR1) was mildly upregulated by ARPE-19 cells
grown on AGE-MG. Although the EGF receptor ERBB3 was
downregulated, the EGF receptor HER4 and eps15, a substrate for EGF
receptors,16
were upregulated. Several transcription
factors that regulate genes that promote cell differentiation,
including GATA-2, GATA-3, and ID-3, were downregulated in ARPE-19 cells
grown on AGE-MG, as listed in Table 2
.
We performed RT-PCR/Southern blot analysis to confirm the expression
pattern of WNT-10B, manic fringe, and smoothened using identical
culture conditions as described above (Fig. 2)
. WNT-10B and manic fringe showed a 70% downregulation
(n = 3; P = 0.05) and a 20%
upregulation (n = 3; P = 0.05),
respectively, by ARPE-19 cells grown on AGE-MG. We found a 13%
decrease in smoothened expression (n = 3;
P = 0.2) by ARPE-19 cells grown on AGE-MG, although
this difference was not significant.

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Figure 2. Representative RT-PCR analysis with Southern blot analysis of ARPE-19
cells grown on AGE-MG and MG. ARPE-19 cells were grown under identical
conditions as for the microarray experiments. Total RNA was extracted
and subjected to RT-PCR (column 1), Southern
transferred, and hybridized with a 32P-labeled internal
probe (column 2). The Southern blot analysis
phosphorimager signals were normalized to that of GAPDH. WNT, Wingless
10B; MFNG, Manic Fringe; smoh, Smoothened; M, ARPE-19 cells grown on
Matrigel; A, ARPE-19 cells grown on AGE-Matrigel.
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Altered Expression of Genes Involved in Bruchs Membrane
Regulation by AGEs
Growth factors that regulate the extracellular matrix were
upregulated by RPE cells grown on AGE-MG, including connective tissue
growth factor (CTGF; 3.1-fold induction), TGF-ß2 (2-fold induction),
and to a lesser extent, PDGF-B (1.3-fold induction). We confirmed the
upregulation of CTGF (4.1 ± 1.4-fold, P = 0.037),
TGF-ß2 (2.3 ± 0.1-fold, P = 0.037), and PDGF-B
(2.0 ± 0.4-fold, P = 0.012) three times by
Northern blot analysis using identical growth conditions (Fig. 3)
. The selectivity of an AGE-induced upregulation of TGF-ß2 is
suggested by lack of TGF-ß1 and -ß3 expression by both microarray
and Northern analyses (data not shown). In addition, the microarray
experiments identified upregulation of Stem cell factor (2-fold), PAI-1
(2.1-fold), and the elastin protease myeloblastin (2.0-fold) by ARPE-19
cells grown on AGE-MG.

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Figure 3. Representative Northern blot analysis of ARPE-19 cells grown on AGE-MG
and MG. ARPE-19 cells were grown under identical conditions as for the
microarray experiments. Total RNA was extracted and subjected to
Northern blot analysis for CTGF, TGF-ß2, and PDGF-B. Signals were
normalized to 28S rRNA.
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Induction of Early Pathway Apoptosis Genes by AGEs
A set of genes involved in apoptosis showed altered expression by
ARPE-19 cells grown on AGE-MG, as shown in Table 3
. Our initial filtering found only Bcl-2 as significantly downregulated,
but further analysis also identified 11 other apoptosis-related genes,
mainly from the TNF-
superfamily, with mildly upregulated
expression, and because of their functional relationship, they were
included in our analysis. Several DNA repair enzymes are listed that
are significantly downregulated, which could impair the cells ability
to repair DNA damage during apoptosis.
To determine whether functional evidence of early apoptosis was induced
by cells grown on AGE-MG, ARPE-19 cells grown under the previously
described identical conditions were assessed for externalization of
phosphatidylserine in the plasma membrane as an early indicator of
apoptosis with annexin V staining and loss of viability with nuclear
propidium iodide staining. Flow cytometric analysis revealed no
evidence of apoptosis by ARPE-19 cells 3 days after serum withdrawal,
but by 7 days, increased annexin V and propidium iodide staining was
present in cells grown on AGE-MG. As shown in Figure 4a
representative experiment shows that the percentage of cells with
evidence of early apoptosis but still viable cells (annexin V staining
only) increased from 1.1% ± 0.34% when grown on MG to 4.5% ± 1.0%
when grown on AGE-MG (n = 4, P =
0.016). In addition, the percentage of nonviable apoptotic cells
increased from 3.4% ± 0.34% to 8.9% ± 1.7% when grown on AGE-MG
(n = 4, P = 0.02).

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Figure 4. Effect of AGE-MG on inducing apoptosis. ARPE-19 cells were grown in
DMEM/F12 + 10% FBS for 1 day and then in DMEM/F12 + 1% BSA for 7 days
on MG (A) and AGE-MG (B). Apoptosis was assessed
with two-parameter analysis by staining with annexin V (early apoptotic
externalization of phosphatidylserine) and propidium iodide (cell
viability) and measured by flow cytometry. Normal cells (bottom
left quadrant) had low annexin V and low PI staining. The early
apoptotic cells (bottom right quadrant) had high annexin V
and low PI staining. The dead cells (top right quadrant) had
high annexin V and high PI staining. Percentages of cells in each
quadrant are indicated. Results are one replicate sample of one
experiment that is representative of three independent experiments that
were conducted.
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Discussion
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We report an altered mRNA phenotype induced by ARPE-19 cells in
vitro grown on Growth Factor Reduced Matrigel modified by AGEs. The
microarray approach allowed us to examine a relatively large gene set,
which uncovered an expression profile that could influence aging of RPE
cells. Although the fold changes induced by AGEs were moderate, we
confirmed the expression patterns of a selected subset of genes by
RT-PCR/Southern and Northern analyses. The gene clusters with altered
expression include those involved in cell differentiation,
maintenance of the basement membrane, and early apoptosis. This
analysis identified genes that were previously not known to be
regulated by AGEs, expressed by RPE cells, or implicated in aging
changes.
AGE modification to the matrix altered the expression of genes involved
in cellcell signaling that regulate cell differentiation, which could
have influenced in part the morphologic changes observed in our
experiments. Ligand to transcription factor genes from the Wingless,
Notch, Hedgehog, and EGF receptor pathways showed altered expression in
a manner that would promote loss of differentiation by AGEs. These
highly conserved, complex inter-related pathways control developmental
decisions during morphogenesis in the embryo and cell polarity in adult
tissue, through cellcell interaction.17
18
19
20
21
The
Notch pathway has gained interest in the aging community because the
presenilins have been associated with abnormal ß-amyloid processing
in Alzheimers disease.18
22
Tight temporal and spatial
regulation of Hedgehog receptor Smoothened and the Notch-modulating
Fringe proteins are necessary for mouse skin epidermal
differentiation.20
23
The EGF receptor pathway can
influence cell differentiation through the Ras/Raf/MAPK
pathway24
and/or indirectly through Hedgehog and Wingless
signaling via disheveled.25
26
An intriguing finding was
the upregulation of eps-15, which promotes the endocytotic
downregulation of EGF receptors and directly influences actin
cytoskeletal-mediated morphologic changes.16
The
downregulation of GATA-2 and GATA-3 is of potential
significance because the GATA family transcription factors have been
linked to the Wingless signaling pathway.27
Although a
complete characterization of these pathways was not possible because of
the limited number of genes on the microarray system used in this
study, these results raise the possibility that AGE-induced alterations
on RPE differentiation are influenced by these inter-related pathways.
The upregulation of TGF-ß2, CTGF, and PDGF-B by AGEs could promote a
phenotype that expands Bruchs membrane, a finding found during aging
and age-related macular degeneration (AMD). Our confirmatory Northern
blot analysis showed that microarray analysis underestimated the
relative changes in expression of these genes, an effect that was seen
by Luo et al.,11
possibly from suboptimal hybridization
conditions. Furthermore, Northern analyses of the TGF-ß isoforms
confirmed our microarray results that TGF-ß2, the predominant isoform
expressed by the RPE, was selectively upregulated.28
TGF-ß2 and CTGF are coordinately expressed in every fibrotic disorder
examined to date, through a TGF-ß responsive site in the CTGF
promoter.29
30
31
32
33
34
The upregulation of TGF-ß2 and CTGF
could promote matrix protein accumulation either by increased matrix
protein synthesis or decreased degradation. AGEs promote matrix
fibrosis by altering both matrix protein and matrix protease
expression.15
Of the matrix metalloproteinases (MMPs),
their inhibitors (TIMPs), and the plasminogen system, only PAI-1
expression was altered by ARPE-19 cells grown on AGE-MG, which could
expand the matrix by decreasing plasmin activation and directly reduce
proteolytic degradation or MMP activation.35
36
Because an
interruption in the elastic layer of Bruchs membrane is an
identifiable histopathologic change in AMD, it is of potential interest
that the elastase myeloblastin was upregulated by AGEs.37
AGEs induce apoptosis in part by generating reactive oxygen
species.38
39
40
41
42
Alternatively, TGF-ß or TNF-
, both of
which were upregulated by AGEs in our studies, promote apoptosis in a
number of cell types including RPE cells.43
44
45
46
47
Our
analysis found a cluster of genes predominantly from the early
apoptosis pathways, such as death signalers and central modulators,
with an expression pattern that would promote
apoptosis.48
49
Interestingly, the death signalers
upregulated in our study are from the TNF superfamily. Although FAS is
almost exclusively linked to apoptosis, a role for TNF R1 and R2
activation is less clear, because they mediate a variety of biological
effects.49
50
However, the associated upregulation of
TRADD, a TNF R1 adaptor protein, supports apoptosis signaling by TNF
receptor activation.50
TNF receptorinduced apoptosis
signaling can also be mediated through ceramide.49
It is
intriguing that our analysis also found upregulation of phospholipase
C, which promotes ceramide generation, by ARPE-19 cells grown on
AGE-MG.49
Our annexin V studies provide functional
evidence of apoptosis potentially induced by this cluster of genes.
Because RPE apoptosis has been commonly hypothesized to play a role in
the development of AMD,51
these results warrant further
investigation of this gene set.
Caution must be used in fully comparing the AGE-induced gene expression
profile found in this study to aging of the RPE or AMD. Although the
ARPE-19 cell line has been characterized in depth and displays many of
the characteristics of the RPE in vivo, full applicability to other RPE
cell lines or to the RPE in vivo is open to speculation. It is unclear
if these gene expression changes translate into similar protein
profiles or if there is a correlative functional change. The
morphologic and annexin V labeling changes by ARPE-19 cells grown on
AGE-MG are at least very preliminary evidence of a functional
consequence of these gene expression changes. We acknowledge that
Matrigel, although the best-known basement membrane approximation in
vitro, could induce artifactual gene expression changes or that
nonphysiologic AGEs could be produced by glycolaldehyde and influence
our results. Our objective was to determine whether AGEs could induce
an altered mRNA phenotype. To this end, our work addressed this
purpose. A glimpse at the diversity of gene expression alterations
induced by AGEs was made possible with a high through-put approach.
Further work characterizing AGE-induced changes, determining what
changes are "cause or effect," and identifying an AGE mediated
aging effect to the RPE in vivo is warranted and underway.
 |
Footnotes
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Supported by National Institutes of Health, National Eye Institute
Grants 00344 (JTH) and 06473 (LMH), Research to Prevent Blindness
Manpower Award (JTH), and an unrestricted Research to Prevent Blindness
grant to the Department of Ophthalmology.
Submitted for publication January 26, 2001; revised May 9, 2001;
accepted May 23, 2001.
Commercial relationships policy: N.
The publication costs of this article were defrayed in part by page
charge payment. This article must therefore be marked
"advertisement" in accordance with 18 U.S.C.
1734
solely to indicate this fact.
Corresponding author: James T. Handa, Wilmer Eye Institute, 3-110
Jefferson Building, 600 N. Wolfe Street, Baltimore, MD 21287.
jthanda{at}jhmi.edu
 |
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