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From 1 The Department of Biology, West Virginia University, Morgantown, West Virginia; and 2 The Jules Stein Eye Institute, University of California Los Angeles Medical School, Los Angeles, California.
| Abstract |
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METHODS. Epithelia from age-related cataracts and from normal lenses were microdissected and RNA was extracted. RNAs were compared for gene expression differences by RT-PCR differential display. Transcripts exhibiting altered levels of gene expression were cloned and identified by sequencing. The expression levels of identified clones were confirmed by semiquantitative RT-PCR with three separately isolated RNA preparations. Specific primers were designed and used to examine the mRNA levels of other genes important in protein synthesis.
RESULTS. Numerous transcripts exhibited altered levels of gene expression. One
transcript exhibiting a decreased level of expression in cataract
compared with normal lenses was identified as encoding ribosomal
protein L21. Three additional ribosomal proteins, L15, L13a, and L7a,
also exhibited decreased expression in cataract compared with normal
human lenses. By contrast, the levels of elongation factor (EF)-1
1
and eucaryotic initiation factor (eIF)-4E remained unchanged.
CONCLUSIONS. The results provide evidence that human age-related cataract is associated with decreased expression of L21 and other ribosomal proteins. The results suggest that modulation of protein synthesis and/or other functions mediated by ribosomal proteins is associated with age-related cataract.
| Introduction |
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To identify genes with expression levels that are altered in the presence of cataract, we compared the gene expression profiles of epithelia isolated from human lenses with age-related cataract and from normal human lenses. The lens epithelium contains the majority of metabolic enzymes present in the lens.1 2 3 It is the first part of the lens exposed to environmental insult.4 5 Metabolic communication between the lens epithelium and the underlying fiber cells has been demonstrated,6 and damage to the lens epithelium and its enzyme systems is associated with cataract formation.7 8 9 10
We have provided evidence that the human lens epithelium responds to the presence of age-related cataract through alterations in the levels of specific transcripts. These include decreased expression of protein phosphatase 2a regulatory subunit,11 increased expression of metallothionein IIa,11 and increased expression of osteonectin.12
In the present study, we have used RT-PCR differential display and semiquantitative RT-PCR to provide evidence that the large ribosomal subunit proteins L21, L15, L13a, and L7a exhibit decreased expression in cataract compared with normal human lenses.
Ribosomal proteins are major constituents of ribosomes that catalyze protein synthesis in the cytoplasm.13 The eukaryotic ribosome is composed of a large (60S) and a small (40S) subunit consisting of three RNAs and 46 proteins and one RNA and 33 proteins, respectively.14 The catalytic functions specific to individual ribosomal proteins are largely unknown.14 15 Under normal conditions, ribosomal proteins are synthesized stoichiometrically with rRNA to produce equimolar amounts of RNA and protein. Under altered conditions, including events surrounding cellular growth and proliferation,16 the expression levels of ribosomal proteins are altered. For instance, the large ribosomal subunit proteins L3, L7, L8, L10, L23a, L27a, L36a, and L39 exhibit decreased expression during neuronal differentiation of human embryonic carcinoma cells, as do the levels of the small ribosomal subunit proteins.17 These alterations appear to be restricted to specific ribosomal proteins, because some ribosomal protein levels are altered, whereas others remain constant.18 19
Independent alterations in ribosomal protein synthesis suggest that individual ribosomal proteins have functions beyond the simple structural makeup of the ribosome or protein synthesis. For example, P0 and S3 possess endonuclease activity, suggesting that they may have DNA repair functions,20 21 and L7 can function as a coactivator of nuclear receptors.22 L7, S20, and S3a have been implicated in apoptosis.23 24 25 Altered ratios of ribosomal subunits are also associated with stage-specific tissue development.26 Several ribosomal proteins are known to be induced by agents associated with cataract including RPL13a, the synthesis of which is activated by exposure to UV irradiation, and RPL7, the synthesis of which is activated by exposure to UV irradiation, heat shock, or carcinogens.27
The present data provide evidence that the levels of specific ribosomal transcripts are decreased in age-related human cataract. Although we cannot distinguish that decreased ribosomal protein expression is a consequence of cataract or a response of the lens to cataract, the results suggest that regulation of protein synthesis and/or other functions mediated by ribosomes are associated with age-related cataract.
| Methods |
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The cataract epithelia in this study represent the normal population undergoing cataract surgery at the Jules Stein Eye Institute (Los Angeles, CA), and were obtained and classified by the same surgeon, according to a modified version of the Lens Opacities Classification Scale (LOCS)-III grading system. The cataracts used in this study were approximately 70% mixed, 20% nuclear, 5% cortical, and 2% posterior subcapsular. With the exception of cataract type, age, and sex no further identifying information was available for individual lenses. Total RNA was prepared from all samples using an extraction kit, as specified by the manufacturer (RNeasy; Qiagen, Valencia, CA) and quantified as previously described.12 For RT-PCR differential display, RNA samples were treated with RNase-free DNaseI to remove possible DNA contamination.29
RT-PCR Differential Display
Differential display reactions were performed in duplicate to
reduce the potential for artifacts. For first-strand cDNA
synthesis, duplicate samples of 200 ng of cataractous and
normal RNA were subjected to reverse transcription using 0.2 µM of an
anchored primer (AP1) of sequence
5'-ACGACTCACTATAGGGCTTTTTTTTTTTTAA-3', containing the T7
promoter sequence (italic), a T12 anchoring sequence, and two anchoring
bases. First-strand synthesis was performed by incubation at 25°C for
10 minutes, 42°C for 60 minutes, and 70°C for 15 minutes, in the
presence of 25 µM deoxyribonucleoside triphosphates, 10 mM
dithiothreitol (DTT), 20 U RNasin (Promega, Madison, WI), and 40 U
reverse transcriptase (Superscript II; Gibco-BRL, Gaithersburg, MD) in
a volume of 20 µL reverse transcription buffer (50 mM Tris [pH
8.3], 6 mM MgCl2, and 10 mM KCl).
Amplification of Double-Stranded cDNA Fragments
Double-stranded cDNAs were generated by PCR, by using two
different primer sets. In both reactions 0.2 µM of the anchored
first-strand synthesis primer was used (see prior section). In separate
reactions, either 0.2 µM arbitrary annealing primer one (AR1;
5'-ACAATTTCACACAGGACGACTCCAAG-3') or arbitrary annealing
primer 2 (AR2; 5'-ACAATTTCACACAGGAGCTAGCATGG-3') was used.
Both primers contain the M13 reverse sequence (italic). PCR was
performed with 1 U Taq polymerase (AmpliTaq;
Perkin Elmer, Norwalk, CT) in the presence of 2.5 µCi
[
-33P]-deoxyadenosine triphosphate
(10003000 Ci/mmol; DuPont NEN, Boston, MA), 1.5 mM
MgCl2, and 100 µM deoxynucleoside
triphosphates, in a reaction volume of 20 µL. PCR cycles were as
follows: 1 cycle at 95°C for 2 minutes; 4 cycles at 92°C for 15
seconds, 46°C for 30 seconds, and 72°C for 2 minutes; 25 cycles at
92°C for 15 seconds, 60°C for 30 seconds, and 72°C for 2 minutes;
and 1 cycle at 72°C for 7 minutes. After amplification,
[
-33P]-labeled cDNA fragments were separated
by electrophoresis on 4.5% polyacrylamide, 8-M urea gels and
visualized by autoradiography.
Reamplification of Differentially Displayed Bands
Bands of differing intensity, and two unchanged bands (as a
control), between the cataract and the normal samples were excised from
the gel, and the resultant gel slices were directly subjected to PCR.
cDNAs were bidirectionally amplified with 0.2 µM of each full-length
T7 primer (5'-GTAATACGACTCACTATAGGGC-3') and M13 reverse
(-48)-sequencing primers(5'-AGCGGATAACAATTTCACACAGGA-3'). The
PCR conditions and cycles used in these procedures were identical with
those described for amplification of double-stranded cDNA fragments,
except that [
-33P]-deoxyadenosine
triphosphate was omitted from the reaction mixture. Products were
separated by electrophoresis on 1.2% agarose gels and visualized by
ethidium bromide staining.
Cloning and Sequence Analysis of Differentially Displayed cDNAs
Reamplified differentially displayed bands were analyzed by
electrophoresis on 1.2% agarose gels. The products were cloned into
the a cloning vector (TOPO TA; Invitrogen, San Diego, CA), according to
the manufacturers instructions. Cloned differentially displayed
products were sequenced by fluorescent dye terminator cycle sequencing
as specified by the manufacturer (PE Applied Biosystems, Warrington,
UK), using a sequencing primer (5'-GCTCGGATCCACTAGTAACGG-3')
complementary to the vectors (TOPO TA) SP6 sequence. Reactions were
run and sequences analyzed (Model 373A DNA sequencer; PE Applied
Biosystems). Sequences were further analyzed using the BLAST algorithm
with GenBank data (provided in the public domain by the National Center
for Biotechnology Information, Bethesda, MD, and available at
http://www.ncbi.nlm.nih.gov/genbank), and sequence alignments were
performed on computer (MegAlign program contained in the Lasergene
software package; DNAstar, Madison, WI).
Semiquantitative RT-PCR
Semiquantitative RT-PCR was performed by modification of
established procedures.12
29
RNA from individual samples
was examined using the one-step system, according to the manufacturer
(Gibco-BRL). Primers were designed to cross intronexon boundaries.
The primer concentration of 200 nM used in these experiments was chosen
to ensure that the amount of primers would not be limiting. Control
reactions used primers specific for human ß-actin and
glyceraldehyde-phosphate dehydrogenase (GAPDH). PCR cycling parameters
(2025 cycles) were chosen to ensure linear product formation over the
amounts of RNA and other reagents described. The sequences of the
gene-specific primers used to amplify the ß-actin, GAPDH, L21, gp130,
L15, L13a, L7a, eIF4E, and EF1
1 transcripts along with their
corresponding
GenBank accession numbers and annealing temperatures are shown in Table 1 . Products were separated on 1.2% agarose gels and visualized
by ethidium bromide staining. Reaction products were sequenced to
ensure they represented the authentic transcripts. Where indicated, 1
µCi of 1000- to 3000-mCi/mmol
[
-33P]-deoxyadenosine triphosphate was added
to each RT-PCR reaction, and incorporated radioactivity was monitored
by scintillation counting of excised RT-PCR products.
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| Results |
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Consistent with the differential display results (Fig. 1) , L21 expression was almost entirely restricted to normal lens epithelium (Fig. 3B , compare lanes 3 and 7 with 4 and 8). As a control, gp130 was detected at equal levels between those of cataract and normal epithelia (Fig. 3B , compare lanes 1 and 5 with 2 and 6). As a further control, the levels of ß-actin transcript were identical between cataract and normal epithelia (Fig. 3A , compare lanes 1 and 2).
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33P]-adenosine triphosphate (ATP)
incorporation into RT-PCR products using a third set of cataractous and
normal RNAs prepared from an additional 25 cataractous and 10 normal
lenses. Consistent with the differential display results (Fig. 1)
and
the previous RT-PCR results (Fig. 3)
, L21 expression was significantly
decreased between cataractous and normal lenses (Fig. 4A
, compare lanes 1 and 3 with lanes 2 and 4). The levels of gp130 or GAPDH
control transcripts were the same between cataractous and normal lenses
(Figs. 4B 4C)
. Based on incorporated radioactivity, it is estimated
that L21 levels were decreased three- to fourfold between cataractous
and normal human lenses.
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Expression of Other Ribosomal Proteins in Cataract Versus Normal
Human Lenses
To determine whether the levels of other ribosomal proteins in
addition to L21 were decreased between cataractous and normal lenses,
the levels of three other large ribosomal subunit proteins L15, L13a,
and L7a were examined, using RNAs prepared from an additional 15
cataractous and 8 normal human lens epithelia (Fig. 6A)
. The levels of the elongation factor EF1
1 and the initiation
factor eIF4E were also examined (Fig. 6B)
. The level of GAPDH was
examined as a control (Fig. 6C)
.
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1 and eIF4E
transcripts were unaltered between cataractous and normal lenses (Fig. 6B
, lanes 14). As a control, GAPDH transcript levels were identical
between cataractous and normal lenses (Fig. 6C
, compare lanes 1 and 3). | Discussion |
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Decreased L21 expression between cataractous and normal lenses is not a consequence of spatial differences between different parts of the lens epithelium, in that identical levels of L21 were detected by RT-PCR, by using central versus peripheral lens epithelial RNA.
It is unlikely that differences in L21 expression are a consequence of
differences between postmortem times, because all samples were stored
on ice during transport, and no differences in the levels of GAPDH or
ßB2-crystallin transcripts were detected between lens epithelia
stored for 1 hour or 36 hours at 4°C (data not shown). Moreover, the
levels of most transcripts detected in the present study by both
differential display and RT-PCR, including GAPDH, gp130, EF1
1, and
eIF4E, were identical in cataractous and normal lenses. If postmortem
times were a factor, it is likely that large differences in the levels
of all transcripts would have been detected.
Every attempt was made to ensure the detection of cataract-specific differences in the present study. However, we cannot rule out the possibility that changes in L21 expression could also be related to differences in age between normal and cataractous lenses (averaging 60 and 71 years, respectively) or differences in medical histories or racial and regional characteristics of individual donors. The human population is diverse, and each individual has a unique life history, making it extremely difficult, if not impossible, to obtain exact controls. We are confident that our results are cataract-specific, because identical levels of gene expression were detected in three separately isolated populations of normal and cataractous lenses, which would be expected to compensate for interindividual variability. However, we cannot eliminate the possibility of these factors having some influence on our results or their interpretation.
The onset of cataract is gradual, and some of the normal lenses used in the present study are likely to have contained undetected opacities, despite careful microscopic examination performed to reduce this possibility. The presence of cataractous lenses mixed with the normal lenses may have the effect of reducing the magnitude of gene expression differences detected in the present study, but is not likely to change the overall trends in gene expression established by the present data.
The lenses examined in this study had mostly mixed cataracts, with approximately 20% nuclear cataracts and a smaller percentage of cortical and posterior subcapsular cataracts. Thus, no direct correlation between decreased expression of L21 and cataract type can be made from the present study. In preliminary experiments, no difference in the levels of L21 was detected in individual cataracts. Further studies with large numbers of individual lenses are needed to establish a relationship between L21 expression and specific cataract phenotypes.
L21 is not the only ribosomal protein exhibiting decreased expression
between cataractous and normal human lenses. Decreased expression of
L15, L13a, and, to a lesser extent, L7a was also detected. In contrast
to the ribosomal proteins, two other proteins involved in protein
synthesis, EF1
1 and eIF4E, exhibited identical levels of expression
in cataractous and normal lenses. Unchanged levels of EF1
1 and eIF4E
is not a surprising result, because previous reports have indicated
that translational control32
and gene
amplification33
are responsible for altered levels of
these proteins, respectively.
Decreased expression of ribosomal proteins is likely to result in decreased lens protein synthesis. Protein synthesis is dependent on the relative levels of ribosomal proteins, ribosomal RNA, initiation factors, and elongation factors.14 Because approximately 98% of total RNA is ribosomal RNA, and measurements performed in the present study were equalized to total RNA, the present data indicate that the ratio of ribosomal RNA to total RNA is decreased in cataractous compared with normal lenses. This is likely to result in decreased translation of lens proteins through decreased availability of ribosomal subunits.
It is not possible to distinguish whether decreased expression of ribosomal transcripts is a consequence of cataract or a specific response of the lens to the presence of cataract. Further studies are needed to elucidate the mechanisms underlying this phenomenon. Regardless of whether decreased ribosomal transcript expression is a consequence of cataract or a response of the lens to the presence of cataract, the present results suggest that decreased translation of proteins is associated with age-related cataract, and this hypothesis is supported by other studies that have demonstrated decreased protein synthesis in association with lens insult34 35 26 and cataract.36 37 38
In addition to having a direct role in protein synthesis, several ribosomal proteins identified in the present study have additional functions. L13 has been proposed to act as a tumor suppressor,18 and L7 can function as a coregulator of nuclear receptors.10 L7 has also been implicated in apoptotic pathways23 24 25 and is induced by UV light and heat shock.27 Many of these functions are also associated with cataract, and it is interesting to speculate that they may be related to the decreased expression of ribosomal transcripts identified in the present study.
Regardless of the function for decreased expression of ribosomal proteins in cataract, the present report supports the hypothesis that age-related cataract is associated with changes in the expression levels of specific genes. The data also suggest that changes in protein synthesis and/or other pathways mediated by ribosomal proteins may play important roles in lens transparency.
| Acknowledgements |
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| Footnotes |
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Submitted for publication July 3, 2001; revised August 30, 2001; accepted September 19, 2001.
Commercial relationships policy: N.
The publication costs of this article were defrayed in part by page charge payment. This article must therefore be marked "advertisement" in accordance with 18 U.S.C.
1734 solely to indicate this fact.
Corresponding author: Marc Kantorow, Department of Biology, West Virginia University, 311 Brooks Hall, Morgantown, WV 26506-6057; mkantoro{at}wvu.edu.
| References |
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protein levels is an immediate early event during oxidative stress-induced apoptosis Exp Cell Res 259,140-148[Medline][Order article via Infotrieve]
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