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(Investigative Ophthalmology and Visual Science. 2005;46:3081-3088.)
© 2005 by The Association for Research in Vision and Ophthalmology, Inc.
DOI:  10.1167/iovs.04-1360

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Genome-Wide Analyses Demonstrate Novel Loci That Predispose to Drusen Formation

Gyungah Jun,1 Barbara E. K. Klein,2 Ronald Klein,2 Katherine Fox,1 Christopher Millard,1 Jennifer Capriotti,1 Karlie Russo,1 Kristine E. Lee,2 Robert C. Elston,1 and Sudha K. Iyengar1,3

1From the Departments of Epidemiology and Biostatistics, and 3Ophthalmology, Case Western Reserve University, Cleveland, Ohio; and the 2Department of Ophthalmology and Visual Sciences, University of Wisconsin Medical School, Madison, Wisconsin.


    Abstract
 Top
 Abstract
 Methods
 Results
 Discussion
 References
 
PURPOSE. To test whether genes for drusen formation are independent of age-related macular degeneration (AMD) pathogenesis.

METHODS. A genome-wide model-free linkage analysis was performed, using two semiquantitative drusen traits, size and type, on two sets of data: (1) 325 individuals (225 sib pairs) from the Beaver Dam Eye Study (BDES), and (2) 297 individuals (346 sib pairs) from the Family Age Related Maculopathy Study (FARMS). Apolipoprotein E (APOE) genotypes were used as a covariate in a multipoint sibpair analysis.

RESULTS. The authors found evidence of linkage on 19q13.31 (D19S245), with size of drusen in both the BDES (P = 0.0287) and the FARMS (P = 0.0013; P = 0.0005, combined). In the BDES, type showed linkage evidence on 3p24.3 (D3S1768; P = 0.0189) and 3q25.1 (D3S2404; P = 0.0141); the linkage on 3p24.3 was also found with size (D3S1768; P = 0.0264). In the FARMS, size showed evidence of linkage at 5q33.3 (D5S820; P = 0.0021), 14q32.33 (D14S1007; P = 0.0013), and 16p13.13 (D16S2616; P = 0.0015) and type at 21q21.2 (D21S2052; P = 0.0070). For size in the FARMS, there was a small increase in P-value at marker D19S245 from 0.0044 to 0.0111, and from 0.0044 to 0.0064, when the {epsilon}4-carrier and the {epsilon}3-carrier genotype were the covariates, respectively.

CONCLUSIONS. The results show that APOE effects may be mediated early in the progression of ARM to AMD and thus may not be detected by standard genome scans for more severe disease.


Age-related maculopathy (ARM) is a complex degenerative eye disorder that primarily affects the macular region of the eye. Progression from ARM to age-related macular degeneration (AMD) is the main cause of blindness in the elderly population in the United States. Approximately 1.7 million Americans 40 years of age or older have the advanced stages and 7.3 million show the earlier stages of AMD.1 2 3 Despite extensive research on AMD, the effect of drusen formation on AMD pathogenesis remains unknown. One assumption in this process is that drusen represent an early stage in the natural history of disease and that other genes are necessary for the progression to exudative or neovascular stages of the disease. Hamdi and Kenney4 proposed that drusen formation is independently controlled by genes affecting many retinal dystrophies, citing as examples the presence of drusen in other retinal dystrophies such as RDS-associated pattern dystrophy, Stargardt disease, dominant drusen dystrophy, glomerulonephritis type II, and North Carolina macular dystrophy. They also proposed that progression to advanced neovascular stages of AMD invokes separate genetic pathways.

So far, six genes have been associated with AMD. They include the ATP-binding cassette rim protein (ABCA4),5 6 apolipoprotein E (APOE),7 8 angiotensin converting enzyme (ACE),9 complement factor H (CFH),10 11 12 hemicentin-1,13 and fibulin 5 (FBLN5).14 Of these genes, APOE is an attractive candidate for AMD pathogenesis. A recent study showed that the APOE protein is present in the human retina and the retinal pigment epithelium (RPE),15 and age-related alteration of lipoprotein biosynthesis at the level of the RPE and/or Bruch’s membrane may be a significant contributing factor in drusen formation and AMD pathogenesis.16 Genetic association between AMD and the APOE gene has been observed in mouse models,17 18 as well as in human case–control studies,7 8 19 20 21 although this association has not been observed in all studies.22 In those studies in which this association was observed, the APOE epsilon 4({epsilon}4) variant had a protective effect and the epsilon 2({epsilon}2) variant displayed an increased risk for AMD.

To test whether genes that promote drusen formation are independent of AMD pathogenesis, we conducted genome scans on two separate phenotypes: maximum drusen size and severe drusen type. We used data from two different cohorts, the Beaver Dam Eye Study (BDES) and the Family Age Related Maculopathy Study (FARMS), to test this hypothesis. The BDES has families with all grades of ARM severity, from early to late, and has previously been analyzed for the genetics of ARM.23 The FARMS data set includes families ascertained through probands with severe AMD, and a genome scan for AMD has also been conducted.24 We compared the results obtained from our previous scans of maculopathy with those of drusen components to identify novel and shared candidate regions.


    Methods
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 Abstract
 Methods
 Results
 Discussion
 References
 
Subjects
The study population consisted of two cohorts: the BDES and FARMS. The BDES includes a community sample of 4926 subjects between 43 and 86 (average, 65.13) years of age at baseline, and a detailed description of this cohort is given elsewhere.23 In brief, 2783 subjects in 602 pedigrees were collected from initial screening. From these, 105 sibships were selected for genotyping and linkage analysis.

The FARMS data were ascertained through index cases with advanced AMD with 306 individuals in 34 families between 20 and 90 (average, 62.81) years of age recruited from the Retinal Clinic at the University of Wisconsin.24 The Internal Review Boards at the University of Wisconsin and Case Western Reserve University approved these studies, and informed consent was obtained from all participants. The research was performed in accordance with the principles of the Declaration of Helsinki.

Phenotypic Evaluation
The size and type of drusen were judged according to the Wisconsin Age-Related Maculopathy Grading Scheme, the detailed description of which is found elsewhere.25 For each eye a severity score was assigned to each drusen size category phenotype as follows: none = 0, questionable = 1, <63 µm in diameter = 2, ≥63 µm to <125 µm in diameter = 3, ≥125 to <250 µm in diameter = 4, ≥250 µm in diameter = 5, and reticular drusen = 6. Similarly, a severity score was assigned for each drusen type category phenotype as follows: none or hard indistinct = 0, hard distinct = 1, soft distinct = 2, and soft indistinct or reticular = 3.26

For each phenotype, measurements for the right and left eyes were averaged at each time point. However, if a score was missing for either eye, then the score for the available eye was substituted for the missing score. Overall, substitution occurred 6.45% of the time for size (n = 2308) and 13.03% for type (n = 2288) in the BDES and 5.63% for size (n = 284) and 18.98% for type (n = 274) in the FARMS. The BDES cohort had data that were collected at 5-year intervals for up to three time points. To include the same or a similar amount of information on each individual, the mean scores of the right and left eyes were averaged separately for size and type over two time points whenever possible. When scores at all three time points were available, the first and last mean scores were averaged; otherwise, the mean scores at the two available time points were averaged. At least two time points of measurements were available for size and type in 75.23% and 74.48% of participants, respectively.

We used multiple regression models to examine the effects of gender, age (at baseline for the BDES), history of heavy drinking, and history of smoking, along with the first-order interactions of these effects, assuming independence of all observations. In the BDES, we found age, age2, history of heavy drinking, interaction between age and history of heavy drinking, and interaction between history of heavy drinking and history of smoking, to be nominally significant at the 5% level in predicting drusen size. Drusen type was predicted by age, age2, and interaction between age and history of smoking. In contrast, for the FARMS, both size and type were predicted solely by age and age2.

To minimize the variance among individuals due to age differences, we used the regression model from the previous section. First, we calculated the residuals for each observation from the final regression model. Next, we obtained the predicted value for an individual at age 80 from the final model. Finally, we added the residuals to this predicted value to obtain our final phenotypes.

Genotyping and Error Checking
After extracting DNA from the blood samples, we used a fluorescence-based genotyping method for the genome scan.23 24 We genotyped 351 markers on 22 chromosomes using the Weber panel 8 marker set in the BDES, which has an average marker spacing of 11 cM. In addition, we included markers in fine-mapped regions of chromosomes 3, 5, 12, and 16 from our previous genome scan.23 Our analysis included extended coverage of additional fine-mapped regions, which consisted of 25, 8, 10, and 4 markers on chromosomes 3, 5, 12, and 16, respectively. We also genotyped individuals from 34 extended families in the FARMS with 381 markers on 22 autosomes, by using the Weber panel 10 of microsatellite markers. This covered the genome at an average marker spacing of 8.85 cM. Two additional markers, D1S406 and D1S236, in close proximity to the ABCA4 gene, were also genotyped. We also included 4, 25, and 14 markers on chromosomes 1, 12, and 15, respectively, from our previous study.24 As a result, the average intermarker distance of fine-mapped regions on chromosomes 1, 12, and 15 decreased to 3.13, 3.40, and 2.86 cM, respectively. Approximately 77% of the markers were shared between the two screening sets.

On the basis of the initial findings from the genome scans, APOE was selected to be genotyped. APOE genotyping was performed by using the previously described restriction endonuclease (HhaI) method followed by agarose electrophoresis.27 We included all the individuals who were originally genotyped (n = 325 in the BDES; n = 297 in the FARMS). Seven individuals from FARMS were set to "missing" in subsequent covariate analysis, because their genotypes were not available.

Inconsistencies of the genotypes within families were examined using MARKERINFO in S.A.G.E. (ver. 4.5; available at http://darwin.cwru.edu/sage/, provided by the Case Western University, Cleveland, OH). In total, 0.69% and 0.24% of the data were treated as missing in the BDES and the FARMS, respectively. In addition, we checked misclassification of relationships in each pedigree using RELTEST in S.A.G.E. (ver. 4.5). In the BDES, we reclassified 6 individuals in 3 full sibships as unrelated and 21 individuals in 12 full sibships as half-sibs.23 In the FARMS, we cleaned genotyping errors, as well as reclassified four individuals in four full sibships as half sibs, and deleted three individuals in three full sibships because they were unrelated.24

Linkage Analyses
To perform a Box-Cox power transformation of the data to maximize power, we performed segregation analysis with SEGREG in S.A.G.E. (ver. 4.5) on these values from the entire BDES sample (size: N = 2308; type: N = 2288) to obtain appropriate population-based transformation parameters. Before transforming the phenotypes in both the BDES and the FARMS, we examined the correlations between size and type. Size and type correlate highly in both the BDES (0.875) and FARMS (0.862). Transformation of the data with the power parameter {lambda}1 = 1.45 for both size and type obtained from the population-based study (BDES) led to retention of the original correlation structure of 0.874 in the BDES and 0.857 in the FARMS. Since the population-based parameter altered the correlation little between size and type after transformation, subsequent analyses were conducted by using this transformation. We also checked the correlations between drusen phenotypes and 15-step AMD severity scale (AMD score).23

Sibling correlations for the size and type were estimated using the FCOR program in S.A.G.E. (ver. 4.5). We performed linkage analyses on the power transformed size and type phenotypes, separately in the BDES and the FARMS, using the GENIBD and SIBPAL programs in S.A.G.E. (ver. 4.5). A weighted combination of squared trait difference and squared mean-corrected trait sum (W4 option) was used as the dependent variable in a Haseman-Elston regression model.28 29

In regions where both the BDES and the FARMS showed linkage, we combined the P-values of the two independent tests, using the Fisher method: letting P1 and P2 be the two P-values, –2{sum}i=1p Ln(Pi) is compared with the {chi}2 distribution with four degrees of freedom.30

Candidate Gene Covariate Analysis
We coded the APOE alleles in two different ways: First, for the additive model, we counted the number of a specific allele, and coded an individual as having 0, 1, or 2 alleles of that type. Second, for the dominant model, we ascertained the presence of a certain allele (e.g., {epsilon}2) and coded for its absence or presence as 0 or 1, without regard for homozygosity or heterozygosity for that allele. For example, the three different genotypes {epsilon}2/{epsilon}3, {epsilon}3/{epsilon}3, and {epsilon}3/{epsilon}4 share the same value (code = 1) in the {epsilon}3 dominant model (E3Dom), but in the {epsilon}3 additive model (E3Add) they were coded as 1, 2, and 1, respectively. We performed model-free linkage analysis with the newly derived covariate included in the model to determine whether inclusion of the covariate (APOE genotype) eliminates the observed linkage in this region on chromosome 19. We compared each covariate model with the baseline model (no covariate).


    Results
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 Abstract
 Methods
 Results
 Discussion
 References
 
Description of Phenotypes
The BDES and FARMS data sets included 325 and 290 genotyped individuals with available phenotypes, respectively. We found larger sized drusen (≥250 µm in diameter or reticular) in the FARMS (15.17%) than in the BDES (5.54%). For type, the number of individuals with soft drusen (distinct or indistinct/reticular) was higher in the BDES (49.54%) than in the FARMS (37.93%). We observed that both drusen size and type correlated highly with the AMD score. The correlations between drusen phenotypes (size and type) and the AMD score in the BDES are 0.8192 and 0.8215 for the size and type, respectively; in the FARMS, 0.7310 and 0.7458 for the size and type, respectively. Table 1 summarizes the phenotypic description in the BDES and FARMS.


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TABLE 1. Phenotypic Description of Genotyped Individuals in the BDES and the FARMS

 
Genome Scan
The BDES data set consisted of 225 sib pairs with size and 224 sib pairs with type, available in 105 families; the FARMS data set comprised 346 sib pairs with both size and type measures available. The correlations between siblings for size and type were 0.1760 and 0.2174 in the BDES, respectively; 0.1074 and 0.0858 in the FARMS, respectively. In addition, the sibling correlations between size and type in the BDES and the FARMS were 0.1961 and 0.1043, respectively. The result of the genome scans for the BDES and the FARMS are presented in Figures 1 and 2 , respectively. In addition, Table 2 displays markers that had a nominal multipoint significance level of P ≤ 0.01 in either study. In the FARMS, we found linkage for size at five markers on chromosomes 5, 14, 16, and 19, and for type at one marker on chromosome 21 (Table 2) . In the BDES, although we did not detect regions with a nominal significance level of P ≤ 0.01, we observed the shared regions on chromosomes 3 and 19, for both size and type, with a nominal significance level of P ≤ 0.05 (Table 3) .



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FIGURE 1. Multipoint results of the genome-wide linkage analysis for size and type in the BDES. For each chromosome, genetic distance (in centimorgans) is plotted on the x-axis against –log10(P) on the y-axis.

 


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FIGURE 2. Multipoint results of the genome-wide linkage analysis for size and type in the FARMS. For each chromosome, genetic distance (in centimorgans) is plotted on the x-axis against –log10(P) on the y-axis.

 

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TABLE 2. Multipoint P-Values in the BDES and the FARMS on Chromosomes 5, 14, 16, 19, and 21 for Drusen Size and Type, Where the Nominal Significance Level in Either Study Is P < 0.01

 

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TABLE 3. Multipoint P-Value for Drusen Size and Type in the BDES on Chromosomes 3 and 19, Where the Nominal Significance Level Is P < 0.05

 
The region with the highest linkage peak was found on chromosome 19 (19q13.31), for drusen size, in the FARMS (Fig. 2) , and there was a similar but weaker peak in the BDES (Fig. 1) . The location of the linkage peak was near D19S245 in the FARMS (46 cM; P = 0.0013) and in the BDES (50 cM; P = 0.0243), and the combined P-value for the two data sets is 0.0005.

We observed additional linkage signals in the FARMS (Fig. 2 ; Table 2 ) on three chromosomes (5q33.3, 14q32.33, and 16p13.13) with size. We detected two closely located peaks on chromosome 5 near D5S816 (138 cM; P = 0.0204) and at D5S820 (160 cM; P = 0.0021). The linkage evidence on chromosome 14 was seen near the long arm at D14S1007 (126 cM; P = 0.0013). On chromosome 16, the signal was seen at D16S2616 (11 cM; P = 0.0015). With type, we observed a linkage signal on chromosome 21 at D21S2052 (22 cM; P = 0.0070).

In addition, we found interesting regions on chromosome 3 (3p24.3 and 3q25.1) in the BDES that showed similar linkage signals with size and type (Fig. 1 ; Table 3 ). At D3S1768 on chromosome 3, we found a linkage signal with both size (55.98 cM; P = 0.0264) and type (60 cM; P = 0.0189). The second signal on chromosome 3 near D3S2404 (166 cM) illustrated evidence of linkage with type (P = 0.0141).

Covariate Analysis with APOE Alleles
We chose to follow up the region on chromosome 19 because this chromosome gave the most significant results and the APOE gene lies within the 1-lod decrease in significance interval. Moreover, previous association studies suggested APOE alleles are associated with AMD.7 8 19 20 21 Overall the APOE genotype and allele frequency distributions in the BDES and FARMS are shown in Table 4 . The most frequent genotype was {epsilon}3/{epsilon}3, both in the BDES (59.38%) and the FARMS (54.48%).


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TABLE 4. APOE Genotypes and Alleles in the BDES and FARMS

 
A summary of the findings in the BDES and FARMS with APOE genotype as a covariate is shown in Table 5 . Inclusion of APOE as a covariate in linkage models led to a decrease in linkage signals compared with baseline (i.e., without a covariate). The P-value at marker D19S245 in the FARMS was increased by approximately one order of magnitude from 0.0044 to 0.0111 with the presence of {epsilon}4 (E4Dom), but did not change much (from 0.0044 to 0.0064) with the presence of {epsilon}3 (E3Dom). However, the linkage signal did not entirely disappear, even after the APOE alleles were accounted for. This implies that the linkage peak on chromosome 19 is not fully accounted by the APOE gene, and a novel locus, close to APOE, may be additionally associated with large soft drusen. We did not find the same covariate effect in the BDES (Table 5) . We detected similar covariate effects using additive models. We have listed these covariate models and their effects for the FARMS data set in Table 6 . The additive models E2E3Add and E3E4Add showed results similar to those of the E3Add model.


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TABLE 5. Multipoint Model-Free Linkage Analysis of Drusen Size in the BDES and FARMS Including APOE Alleles as a Covariate in the Regression

 

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TABLE 6. Extended Covariate Analysis for Drusen Size in the FARMS, Using Model-Free Multipoint Linkage Analysis of the Candidate Region on Chromosome 19

 

    Discussion
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 Abstract
 Methods
 Results
 Discussion
 References
 
The most significant finding was detected on chromosome 19 (at q13.21) with size in both the BDES and the FARMS. Because this region was concordant in both studies, we propose that this can be considered as a replication. After combining the probabilities, our result on chromosome 19 was more significant in aggregate (P = 0.0005) than when individually considered (P = 0.0013 in FARMS and P = 0.0243 in BDES).

The APOE gene, mapped on 19q13.2, is an intriguing candidate gene residing close to the chromosome 19 linkage signal. Numerous association studies of this gene have confirmed the association between APOE alleles and AMD.7 8 19 20 21 We have revealed evidence of linkage at that location using a genome scan, whereas others have not done so.23 24 31 32 33 34 35 36 This may be because most previous genome-wide linkage studies, including ours,23 24 have focused on the late stages of disease with AMD affection status, as opposed to focusing on the early stages of the disease. We were able to find some APOE gene involvement on large drusen presence, although our results suggest that a novel locus for drusen formation might reside close to the APOE locus. Thus, it may be necessary to examine this chromosomal region more carefully for other genes in linkage disequilibrium with APOE.

At the linkage signal on 14q32.33, we did not find known genes that might be involved in AMD or drusen. However, the Usher syndrome type 1A gene (USH1A; 14q32) maps near this region.37 38 For the region on 21q21.2, amyloid beta A4 precursor protein (APP; 21q21) is considered as an interesting candidate gene. In a recent study,39 a macromolecular assembly was observed that contains amyloid ß as well as activated complement components in drusen, suggesting that some of the pathogenic pathways that give rise to drusen and AMD may be shared with other neurodegenerative diseases.

Our results on 3p24.3, 5q33.3, and 16p13.13 are consistent with those reported in previous genome scans with AMD phenotypes. Using size and type of drusen, we were able to confirm the linkage signals on both arms of chromosomes 3 found in our previous BDES genome scan,23 where the 15-scale AMD severity score used included drusen phenotypes as a semiquantitative trait. TIMP4, the tissue inhibitor of metalloproteinase mapped on 3p25 could be a potential candidate gene, because TIMP4 immunoreactivity was detected in situ from human RPE choroids.40 A chemokine receptor (CCR2) on 3p21 could also be considered as a candidate gene, because ccl2 or ccr2 aged knockout mice exhibit cardinal features of AMD, including accumulation of lipofuscin and drusen beneath the RPE, photoreceptor atrophy, and choroidal neovascularization.41

Our finding of linkage on chromosome 5 agrees with the result of our previous genome scan,24 but the shape of the signal is refined with drusen size as the phenotype (Fig. 2) . This region was also identified by a genome scan,34 using ARM affection status, and also showed a bifurcation in the shape of the linkage signal in this region. The authors suggested glutathione peroxidase 3 (GPX3; 5q33.1) as a potential candidate gene.

A recent genome scan showed linkage on 16p using AMD affection status and ordered subset analysis.42 This region harbors MMP25 on 16p13.3, a type of matrix metalloproteinase protein similar in function to MMP3 on 11q23. This is likely to be a good candidate gene because the pattern of MMP immunoreactivity was detected only on the surface of drusen, but was absent in the central part of drusen, implying that drusen are regions lacking proteolysis activity.40

Our approach differs from other previous genome-wide linkage studies for AMD or ARM in two respects. First, we have isolated drusen phenotypes from the AMD trait, to investigate the relationship between AMD and drusen phenotypes. Furthermore, we categorized size and type, adapting the scale of severity to cover a wide range of clinical phenotypes, and used them as quantitative traits to provide greater power to detect linkage. Second, we conducted linkage analyses on two independent data sets. As a result, the finding of one analysis not only acts as a replicate to the other, but also as a reference to investigate the similarity and difference of pattern and location of a linkage signal.

Although there are various criteria to characterize drusen phenotypes, we defined the severity of the disease phenotype by maximum involvement of type and size based on the natural progression of drusen in ARM. Only some progress from small, hard (HD) drusen to soft distinct (SD) drusen and even less progress to soft indistinct (SI) drusen. We used this approach deliberately, because in these analyses we are looking for the most severe phenotype, not the presence of a specific type of drusen, knowing that approximately 90% or more of subjects have at least one HD in one eye. Therefore, if we use a criterion that includes HD, we would end up with HD only, HD and SD, and HD and SI, as well as HD, SD, and SI. We believe this would give less chance to identify disease susceptibility genes for large soft drusen, which are known to be associated with progression to more advanced AMD. Analyzing drusen area within the central macula is an alternative approach, since the extent of the macular area covered by drusen correlates highly with size and type. In our previous analyses,23 24 we used drusen area as the least-severe steps of our AMD score. Comparing our current results with the previous results should further refine the relationship between AMD and the drusen phenotypes as defined by our group.

In view of our findings from covariate analysis for the APOE gene, we cannot definitively conclude that this gene is the source of the linkage signal on chromosome 19. Equally, we cannot rule out the possibility that linkage methods to identify variants with low to moderate effect sizes (e.g., APOE alleles) may not have sufficient power in family-based studies. We also observed that the two phenotypes, size and type, correlated highly in both the BDES and the FARMS (see the Methods section). However, for type, we failed to provide evidence of linkage on chromosome 19 in the FARMS. In contrast, we observed a weak linkage peak in the BDES. This may be because the number of individuals with soft drusen was smaller in the FARMS than in the BDES (Table 1) , and consequently the effect size may not be big enough. Alternatively, the genes present in individuals with end-stage disease, as applicable to the FARMS, are unique. These two hypotheses are equally supported by the fact that the correlation between drusen phenotypes and the AMD score (see the result section) was higher in the BDES than in the FARMS.

When we tested the AMD score as a covariate to understand the relationship between the drusen phenotypes and AMD phenotype for the observed linkage on chromosome 19, inclusion of the AMD score did not modify the linkage results at the marker D19S245 (baseline: P = 0.0016, with covariate: P = 0.0013) in the FARMS, or at the marker D19S178 (baseline: P = 0.0377, with covariate: P = 0.0293) in the BDES. This supports our hypothesis that among linkage regions for the drusen phenotypes a few may be independently acting on the AMD pathogenesis, and the region on chromosome 19 may be one of them.

In summary, our evidence of linkage on chromosomes 14 and 19 suggest that specific loci for drusen formation, in particular drusen size, are present. These data imply that APOE and other novel loci are associated with large drusen. Similarly, the region on chromosome 21 may be linked to the type of drusen. These regions may be exclusively involved in drusen formation, because no genome scans have identified these regions for ARM or AMD. In contrast, the loci on chromosomes 3, 5, and 16 confirmed published genome-wide linkage reports for ARM or AMD. Thus, our results, together with other previous findings, have provided better insights into the intertwined nature of multiple genetic influences on AMD, implying that different genes act at different stages of the disease, which contribute separately or together to the final AMD disease outcome. In the future, we hope to investigate several different aspects of AMD and its progression, providing new perspectives for the underlying genetic mechanism of AMD.


    Footnotes
 
Supported in part by Grant GM28356 from the National Institute of General Medical Sciences; U10-EY06594, EY10605, EY13438, and EY015810 from the National Eye Institute; and Grant RR03655 from the National Center for Research Resources.

Submitted for publication November 22, 2004; revised April 5, 2005; accepted April 12, 2005.

Disclosure: G. Jun, None; B.E.K. Klein, None; R. Klein, None; K. Fox, None; C. Millard, None; J. Capriotti, None; K. Russo, None; K.E. Lee, None; R.C. Elston, None; S.K. Iyengar, None

The publication costs of this article were defrayed in part by page charge payment. This article must therefore be marked "advertisement" in accordance with 18 U.S.C. §1734 solely to indicate this fact.

Corresponding author: Sudha K. Iyengar, Department of Epidemiology and Biostatistics, Case Western Reserve University, Wolstein Research Building, 1315, 10900 Euclid Avenue, Cleveland, OH 44106-7281; ski{at}case.edu.


    References
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 Abstract
 Methods
 Results
 Discussion
 References
 

  1. Congdon N, O’Colmain B, Klaver CC, et al. Causes and prevalence of visual impairment among adults in the United States. Arch Ophthalmol. 2004;122:477–485.[Abstract/Free Full Text]
  2. Friedman DS, O’Colmain BJ, Munoz B, et al. Prevalence of age-related macular degeneration in the United States. Arch Ophthalmol. 2004;122:564–572.[Abstract/Free Full Text]
  3. Ambati J, Ambati BK, Yoo SH, Ianchulev S, Adamis AP. Age-related macular degeneration: etiology, pathogenesis, and therapeutic strategies. Surv Ophthalmol. 2003;48:257–293.[CrossRef][ISI][Medline][Order article via Infotrieve]
  4. Hamdi HK, Kenney C. Age-related macular degeneration: a new viewpoint. Frontiers Biosci. 2003;8:305–314.
  5. Allikmets R. Further evidence for an association of ABCR alleles with age-related macular degeneration: the International ABCR Screening Consortium. Am J Hum Genet. 2000;67:487–491.[CrossRef][ISI][Medline][Order article via Infotrieve]
  6. Cideciyan AV, Aleman TS, Swider M, et al. Mutations in ABCA4 result in accumulation of lipofuscin before slowing of the retinoid cycle: a reappraisal of the human disease sequence. Hum Mol Genet. 2004;13:525–534.[Abstract/Free Full Text]
  7. Klaver CCW, Kliffen M, Van Duijn CM, et al. Genetic association of apolipoprotein E with age-related macular degeneration. Am J Hum Genet. 1998;63:200–206.[CrossRef][ISI][Medline][Order article via Infotrieve]
  8. Souied EH, Benlian P, Amouyel P, et al. The {epsilon}4 allele of the apolipoprotein E gene as a potential protective factor for exudative age-related macular degeneration. Am J Ophthalmol. 1998;125:353–359.[CrossRef][ISI][Medline][Order article via Infotrieve]
  9. Hamdi HK, Reznik J, Castellon R, et al. Alu DNA polymorphism in ACE gene is protective for age-related macular degeneration. Biochem Biophys Res Commun. 2002;295:668–672.[CrossRef][ISI][Medline][Order article via Infotrieve]
  10. Edwards AO, Ritter RIII, Abel KJ, Manning A, Panhuysen C, Farrer LA. Complement factor H polymorphism and age-related macular degeneration. Science. 2005;308:421–424.[Abstract/Free Full Text]
  11. Haines JL, Hauser MA, Schmidt S, et al. Complement factor H variant increases the risk of age-related macular degeneration. Science. 2005;308:419–421.[Abstract/Free Full Text]
  12. Klein RJ, Zeiss C, Chew EY, Tsai J, et al. Complement factor H polymorphism in age-related macular degeneration. Science. 2005;308:385–389.[Abstract/Free Full Text]
  13. Schultz DW, Klein ML, Humpert AJ, et al. Analysis of the ARMD1 locus: evidence that a mutation in HEMICENTIN-1 is associated with age-related macular degeneration in a large family. Hum Mol Genet. 2003;12:3315–3323.[Abstract/Free Full Text]
  14. Stone EM, Braun TA, Russell SR, et al. Missense variations in the fibulin 5 gene and age-related macular degeneration. N Engl J Med. 2004;351:346–353.[Abstract/Free Full Text]
  15. Ishida BY, Bailey KR, Duncan KG, et al. Regulated expression of apolipoprotein E by human retinal pigment epithelial cells. J Lipid Res. 2004;45:263–271.[Abstract/Free Full Text]
  16. Malek G, Li CM, Guidry C, Medeiros NE, Curcio CA. Apolipoprotein B in cholesterol-containing drusen and basal deposits of human eyes with age-related maculopathy. Am J Pathol. 2003;162:413–425.[Abstract/Free Full Text]
  17. Dithmar S, Curcio CA, Le NA, Brown S, Grossnicklaus HE. Ultrastructural changes in Bruch’s membrane of apolipoprotein E-deficient mice. Invest Ophthalmol Vis Sci. 2000;41:2035–2042.[Abstract/Free Full Text]
  18. Kliffen M, Lutgens E, Daemen MJAP, De Muinck ED, Mooy CM. The APO*E3-Leiden mouse as an animal model for basal laminar deposit. Br J Ophthalmol. 2000;84:1415–1419.[Abstract/Free Full Text]
  19. Schmidt S, Saunders AM, De La Paz MA, et al. Association of the apolipoprotein E gene with age-related macular degeneration: possible effect modification by family history, age, and gender. Mol Vis. 2000;6:287–293.[ISI][Medline][Order article via Infotrieve]
  20. Baird PN, Guida E, Chu DT, Vu HT, Guymer RH. The epsilon2 and epsilon4 alleles of the apolipoprotein gene are associated with age-related macular degeneration. Invest Ophthalmol Vis Sci. 2004;45:1311–1315.[Abstract/Free Full Text]
  21. Zareparsi S, Reddick AC, Branham KE, et al. Association of apolipoprotein E alleles with susceptibility to age-related macular degeneration in a large cohort from a single center. Invest Ophthalmol Vis Sci. 2004;45:1306–1310.[Abstract/Free Full Text]
  22. Schultz DW, Klein ML, Humpert A, et al. Lack of an association of apolipoprotein E gene polymorphisms with familial age-related macular degeneration. Arch Ophthalmol. 2003;121:679–683.[Abstract/Free Full Text]
  23. Schick JH, Iyengar SK, Klein BE, et al. A whole-genome screen of a quantitative trait of age-related maculopathy in sibships from the Beaver Dam Eye Study. Am J Hum Genet. 2003;72:1412–1424.[CrossRef][ISI][Medline][Order article via Infotrieve]
  24. Iyengar SK, Song D, Klein BEK, et al. Dissection of genomewide-scan data in extended families reveals a major locus and oligogenic susceptibility for age-related macular degeneration. Am J Hum Genet. 2004;74:20–39.[CrossRef][ISI][Medline][Order article via Infotrieve]
  25. Klein R, Peto T, Bird A, Vannewkirk MR. The epidemiology of age-related macular degeneration. Perspective. 2004;137:486–495.
  26. Klein R, Klein BEK, Tomany SC, Meuer SM, Huang GH. Ten-year incidence and progression of age-related maculopathy: the Beaver Dam Eye Study. Ophthalmology. 2002;109:1767–1779.[CrossRef][ISI][Medline][Order article via Infotrieve]
  27. Ballerini S, Bellincampi L, Bernardini S, et al. Apolipoprotein E genotyping: a comparative study between restriction endonuclease mapping and allelic discrimination with the LightCycler. Clin Chim Acta. 2002;317:71–76.[CrossRef][ISI][Medline][Order article via Infotrieve]
  28. Haseman JK, Elston RC. The investigation of linkage between a quantitative trait and a marker locus. Behav Genet. 1972;2:3–19.[CrossRef][ISI][Medline][Order article via Infotrieve]
  29. Shete S, Jacobs KB, Elston RC. Adding further power to the Haseman and Elston method for detecting linkage in larger sibships: weighting sums and differences. Hum Hered. 2003;55:79–85.[CrossRef][ISI][Medline][Order article via Infotrieve]
  30. Fisher RA. Statistical Methods for Research Workers. 1950; 11th ed. 99–111. Oliver and Boyd Edinburgh, Scotland, UK.
  31. Abecasis GR, Yashar BM, Zhao Y, et al. Age-related macular degeneration: a high-resolution genome scan for susceptibility loci in a population enriched for late-stage disease. Am J Hum Genet. 2004;74:482–494.[CrossRef][ISI][Medline][Order article via Infotrieve]
  32. Majewski J, Schultz DW, Weleber RG, et al. Age-related macular degeneration-a genome scan in extended families. Am J Hum Genet. 2003;73:540–550.[CrossRef][ISI][Medline][Order article via Infotrieve]
  33. Seddon JM, Santangelo SL, Book K, Chong S, Cote J.. A genomewide scan for age-related macular degeneration provides evidence for linkage to several chromosomal regions. Am J Hum Genet. 2003;73:780–790.[CrossRef][ISI][Medline][Order article via Infotrieve]
  34. Weeks DE, Conley YP, Mach TS, et al. A full genome scan for age-related maculopathy. Hum Mol Genet. 2000;9:1329–1349.[Abstract/Free Full Text]
  35. Weeks DE, Conley YP, Tsai HJ, et al. Age-related maculopathy: an expanded genome-wide scan with evidence of susceptibility loci within the 1q31 and 17q25 regions. Am J Ophthalmol. 2001;132:682–692.[CrossRef][ISI][Medline][Order article via Infotrieve]
  36. Weeks DE, Conley YP, Tsai HJ, et al. Age-related maculopathy: a genomewide scan with continued evidence of susceptibility loci within the 1q31, 10q26, and 17q25 regions. Am J Hum Genet. 2004;75:174–189.[CrossRef][ISI][Medline][Order article via Infotrieve]
  37. Astuto LM, Weston MD, Carney CA, et al. Genetic heterogeneity of Usher syndrome: analysis of 151 families with Usher type I. Am J Hum Genet. 2000;67:1569–1574.[CrossRef][ISI][Medline][Order article via Infotrieve]
  38. Anderson DH, Talaga KC, Rivest AJ, Barron E, Hageman GS, Johnson LV. Characterization of beta amyloid assemblies in drusen: the deposits associated with aging and age-related macular degeneration. Exp Eye Res. 2004;78:243–256.[CrossRef][ISI][Medline][Order article via Infotrieve]
  39. Larget-Piet D, Gerber S, Bonneau D, et al. Genetic heterogeneity of Usher syndrome type 1 in French families. Genomics. 1994;21:138–143.[CrossRef][ISI][Medline][Order article via Infotrieve]
  40. Leu ST, Batni S, Radeke MJ, Johnson LV, Anderson DH, Clegg DO. Drusen are cold spots for proteolysis: expression of matrix metalloproteinases and their tissue inhibitor proteins in age-related macular degeneration. Exp Eye Res. 2002;74:141–154.[CrossRef][ISI][Medline][Order article via Infotrieve]
  41. Ambati J, Anand A, Fernandez S, et al. An animal model of age-related macular degeneration in senescent ccl-2- or ccr-2-deficient mice. Nat Med. 2003;9:1390–1397.[CrossRef][ISI][Medline][Order article via Infotrieve]
  42. Schmidt S, Scott WK, Postel EA, et al. Ordered subset linkage analysis supports a susceptibility locus for age-related macular degeneration on chromosome 16p12. BMC Genet. 2004;5:1–12.[CrossRef][Medline][Order article via Infotrieve]



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