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1From the Departments of Ophthalmology and 7Microbiology, University Hospital Center (CHU) de Grenoble, Université Joseph Fourier, Grenoble, France; the 2Department of Ophthalmology, Hôpital Edouard Herriot, and 4Centre National de Référence des Staphylocoques, Faculté Laennec, Université Lyon 1, Lyon, France; 3INSERM (Institut National de la Santé et de la Recherche Médicale), U851, Lyon, France; 5Laboratoire de Bactériologie, Centre de Biologie et de Pathologie Est, Hospices Civils de Lyon, Bron, France; the 6Departments of Ophthalmology and 10Microbiology, CHU de Saint-Etienne, Saint-Etienne University, Saint-Etienne, France; and the 8Departments of Ophthalmology and 9Microbiology, CHU de Dijon, Dijon University, Dijon, France.
| Abstract |
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METHODS. Broad-range eubacterial PCR amplification was used, followed by direct DNA sequencing in ocular samples (aqueous humor, vitreous samples from tap or vitrectomy) from 100 consecutive patients presenting with acute postcataract endophthalmitis. Bacterial cultures were performed on the same ocular samples by using traditional methods (brain-heart infusion broth).
RESULTS. At the time of admission, the detection rate was not significantly different between cultures and PCR (38.2% for cultures versus 34.6% for PCR in aqueous humor samples; 54% versus 57% in vitreous from a vitreous tap). In contrast, in the vitreous obtained from vitrectomy, after intravitreous injection of antibiotics, PCR detected bacteria in 70% of the cases, compared with 9% in cultures. By combining PCR and cultures, bacterial identification was obtained in 47% of aqueous humor samples at admission, in 68% of vitreous samples from a vitreous tap at admission, and in 72% of vitreous samples from pars plana vitrectomy. Gram-positive bacteria predominated (94.3%). The concordance between cultures and PCR was 100%. The contamination rate was 2%.
CONCLUSIONS. Cultures and eubacterial PCR are complementary techniques for bacterial identification in eyes with acute postcataract endophthalmitis. PCR technique was needed for identification of the involved microbial pathogen in 25% of all the cases. Eubacterial PCR is more effective than cultures in detecting bacteria in vitreous samples from patients with previous intravitreous administration of antibiotics.
In previous pilot studies of acute and delayed-onset postoperative endophthalmitis, we14 and others15 16 17 18 19 20 obtained promising results by using amplification of eubacterial ribosomal DNA (16S rDNA) from ocular samples. However, there are no data on a large series of patients after cataract surgery, in a real-life environment (i.e., schedule sampling according to the treatment and patient progression). Therefore, the French Institutional Endophthalmitis Study (FRIENDS) group designed a prospective and multicenter study to evaluate further the contribution of direct amplification and sequencing of bacterial 16S rDNA from ocular samples collected in 100 consecutive patients with acute postcataract endophthalmitis, before treatment and after intravitreous injections of antibiotics.
| Methods |
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The diagnosis of acute endophthalmitis was made on the basis of clinical features, including decreased vision, periocular pain, and anterior and posterior segment inflammation (all patients had vitreous infiltration diagnosed by biomicroscopy or ophthalmic ultrasound).
On admission, an immediate tap of AH (in three centers) and/or vitreous (in one center) was performed followed by intravitreousinjection of vancomycin (1 mg) and ceftazidime (2.25 mg). The patients were also treated with a broad-spectrum intravenous antibiotic regimen (ciprofloxacin and piperacillin or fosfomycin) for 5 days and topical drugs (corticosteroids, tropicamide). For ethical reasons, a second AH (n = 53) or vitreous sample (n = 57) was collected from the patients only if a second intravitreous injection and/or a PPV was needed (in cases of visual acuity less than counting fingers, retinal detachment, or anatomic and/or functional aggravation; Fig. 1 ). PPV was always performed after a minimum of one intravitreous injection of antibiotics.
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Control Patients
Two populations of control patients were included: (1) patients undergoing a planned ocular surgery without ocular inflammation (n = 50) and (2) patients with diagnosis of noninfectious uveitis (intraocular lymphoma, n = 5) or nonbacterial uveitis (toxoplasmosis, n = 5). The control samples (AH, n = 35 and vitreous, n = 25) were obtained with the same sterile conditions and analyzed with the same techniques as the infectious specimens. Microbiologic tests were performed by investigators blind to the origin of the sample.
Bacterial Cultures
BHI broths were subcultured on enriched media, including Columbia blood agar and chocolate agar supplemented with polyvitex (bioMérieux, Lyon, France), when bacterial growth was detected or systematically after 2 weeks of culture incubation if no growth was detected. For positive cultures, a Gram stain was performed, and bacterial identification and antibiotic susceptibility testing were performed according to the recommended methods.21
Eubacterial PCR Technique
Bacterial DNA extraction, 16S rDNA PCR amplification, and DNA sequence analysis were performed as previously described.22 23 Eubacterial PCR detected 500 colony-forming units (cfu) of Staphylococcus epidermidis.23 Amplification of the human β-globulin gene served as an internal positive extraction and amplification control.22 The 16S rDNA sequences obtained were compared with those available in the GenBank, EMBL, and DDBJ databases with the program BIBI (Bio Informatic Bacterial Identification; http://pbil.univ-lyon1.fr/bibi/query.php). Identification to the species level was defined as a 16S rDNA sequence similarity of 99% or greater with that of the GenBank prototype strain sequence. Identification to the genus level was defined as a 16S rDNA sequence similarity of 97% or greater with that of the GenBank prototype strain sequence. A failure to identify was defined as a 16S rDNA sequence similarity less than 97% with sequences deposited in GenBank at the time of the analysis.24
To differentiate genetically closely related species of Streptococcus, a portion of the superoxide dismutase gene (sodA) was amplified using SOD-UP and SOD-DOWN primers.25 The amplified sodA sequence was then compared to that in the data bases.
Statistical Analysis
Statistical analysis was performed with commercial software (SPPS, ver. 12.0; SPSS, Chicago, IL). For the comparison of culture and PCR results for ocular samples, the nonparametric McNemar test was used. Mean comparisons were made with the nonparametric Mann-Whitney test. Significance was accepted at P < 0.05.
| Results |
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Initial Ocular Samples before Antibiotic Injection
Aqueous Humor.
AH samples were collected from 76 eyes just before the first intravitreous injection (Fig. 1a ; Table 1 ). Overall, PCR was positive in 26 (34.6%) of 75 of the analyzed samples, and cultures were positive in 26 (38.2%) of 68, which led to a global bacteria identification in 36 (47.3%) of 76 cases. For the 67 eyes that benefited from both PCR and cultures, the distribution of positive and negative samples was not significantly different according to the microbiologic technique used (P = 0.18). Of the 41 samples negative with cultures, four had positive PCR (9.7%).
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Vitreous Samples Obtained from PPV after Intravitreous Antibiotic Therapy
In the overall series, 57 patients underwent a PPV with a mean delay from diagnosis of 4.5 ± 4 days, after an average of 1.75 ± 0.5 intravitreous antibiotic injections (Table 3) . The PCR and cultures of the vitreous samples were positive in 40 (70.1%) and 5 (8.8%) of the 57 cases (P < 0.001), respectively. When PCR and culture results were considered together, the infectious agent was identified in 41 (72%) of 57. In negative cultures, PCR was positive in 35 (73%) of 48 cases.
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PCR Amplification of Part of the sodA Gene
The sodA gene was amplified when eubacterial PCR allowed amplification of 16SrDNA belonging to the Streptococcus genus, but without specifying the species involved. The amplification of the sodA gene identified Strep. oralis in one of the eight cases studied (no. 133). In the other cases when sodA PCR or sequencing failed, cultures allowed isolation of Strep. sanguinis in two cases and Strep. oralis in two other cases.
Overall Results
Overall, when the results of AH and vitreous samples were pooled, the microbiologic diagnosis was obtained in 70% of the cases. Bacteria were Gram-positive in 94.3% of the cases (Table 4) . PCR was necessary (i.e., positive PCR with negative cultures) for the microbiologic diagnosis on initial AH in 4 patients (4/41, 9.7%, and 6 additional patients with no cultures), on initial vitreous tap in 6 patients (6/15, 40%, and 1 additional patient with no culture), and on PPV vitreous in 35 patients (35/48, 72.9%, and 1 additional patient with no culture). If we considered all the ocular samples from each patient, PCR was necessary for microbiologic diagnosis in 25% of the patients, all of whose cultures were negative (PCR+, cultures–). Furthermore, if we considered only the results of PCR of all ocular samples, PCR was sufficient for microbiologic diagnosis in 61% patients (PCR+ with cultures– or +).
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No control samples were positive by culture or PCR. The rate of contamination was estimated as 0% for the control specimens and 2% for samples from endophthalmitis patients. We considered as a possible contaminants an S. epidermidis strain detected by PCR in the second AH sample collected from patient 134 and a Strep. gordonii strain grown from the first AH sample collected in patient 64.
| Discussion |
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Although this study was not designed to compare AH and vitreous samples, the fact that one center systematically performed vitreous tap at admission, limiting the bias of the sampling technique, gave us the opportunity to compare both specimens. The results strongly suggest that initial vitreous tap was more effective than AH samples in detecting bacteria in cultures, as previously reported3 9 10 11 12 13 or by PCR. The low sensitivity of cultures and PCR in AH samples was also supported by the fact that in some patients with negative AH cultures and PCR, detection of microorganisms was further obtained in vitreous samples obtained during PPV.
Our data show that the complementarity of the two techniques was more evident in vitreous samples: Eubacterial PCR detected bacteria in 10% of culture-negative cases in the first AH sample, in 40% in untreated tap vitreous samples, and in 73% of treated PPV vitreous samples. Furthermore, when all ocular samples were analyzed, PCR was sufficient for diagnosis in 61% of the 100 patients. In PPV vitreous samples, previous administration of antibiotics may inhibit bacterial growth but PCR may still detect bacterial DNA of living or killed bacteria.
On the other hand, cultures may have been contributive in PCR– cases (15% for the initial ocular samples), without specificity of the bacterial spectrum. The negativity of PCR tests in culture-positive samples may be related to a lack of sensitivity (amplification of DNA, small inoculum). It is also possible that the DNA from some bacterial strains was not efficiently amplified by a given set of primers.26
Our results confirm the high superiority of PCR compared with culture of vitreous samples after intraocular antibiotic administration.14 In this context only can PCR replace cultures, the number of viable colonies being probably too low for an effective growth in culture medium. However, even if the rate of positive cultures was sharply decreased by treatment, a single injection of intravitreous antimicrobial agents may be insufficient to eradicate the bacteria,27 since in our series 13% of AH samples and 8% of PPV samples were positive for cultures after injection of antibiotics.
This study made it possible to estimate the additional diagnosis allowed by analyzing several intraocular samples. In case of a negative first AH sample, a second AH sample seems useless. In the same way, a sample from PPV was not contributive when performed after an initial vitreous tap (Fig. 1B) . In contrast, vitreous from PPV is of interest after AH sampling, since in approximately 40% of cases a bacterium may be detected (mainly by PCR). One should be aware that this analysis suffers from bias associated with the decision to perform PPV or administer a new injection of antibiotics (the sampling was done at this time), which may limit this conclusion.
There were some discrepancies between the positivity rate of PCR in our study and that reported in the literature. Three main factors may be responsible for the different results obtained by different laboratories: the PCR technique, the nature of the ocular sample, and the population studied. This study was focused on a homogeneous population of patients with acute postcataract endophthalmitis, whereas other studies differ in the number of patients (from 5 to 55), the bacterial spectrum, the delay of postoperative endophthalmitis,14 15 18 19 28 29 the type of surgery,14 and the inclusion of endogenous or posttraumatic endophthalmitis.19 29
When eubacterial PCR allowed detection of Streptococcus sp. DNA, identification of bacteria at the species level was not always possible, since some Streptococcus species share greater than 99% homology in their 16S rDNA sequences.30 For example, it may be difficult to differentiate the following species: Strep. mitis, Strep. oralis, Strep. sanguinis, and Strep. pneumoniae. In this case, amplification and sequencing of another gene (e.g., sodA) may allow differentiation of these species. In practice, sodA partial gene sequencing should be considered only in cases with negative cultures.
The concordance between eubacterial PCR and conventional cultures was considered 100%. However, the level of identification may be different between the two techniques. In some cases, the identification of subtypes was not possible by PCR when a 16S rDNA sequence had less than 97% similarity with sequences deposited in GenBank.24 For example, the S. epidermidis/caprae/capitis/saccharolyticus, S. warneri/pasteuri/auricularis/piscifermentans/lugdunensis or Strep. mitis/oralis/sanguinis/pneumoniae sequence may not allow an identification of the bacteria at the species level.
Use of a scrupulous PCR technique is necessary to avoid false-positive results, which includes a meticulous ocular disinfection to avoid contamination with conjunctival ocular flora during sampling. Contamination must also be avoided during the processing of ocular samples at each step of the procedure. In the control samples, the false-positive rate in this study was 0%, lower than that reported in other studies (nearly 5%).16 20 Contamination was not considered a limiting factor in this study.
This prospective study gives insight into the microbial flora responsible for acute endophthalmitis after cataract surgery: Gram-positive bacteria, especially coagulase negative Staphylococcus (CNS) species, remain the most common causative organisms in this context.3 31 Compared with a previous study reported in France (GEEP study)1 32 there seems to be a decline in Gram-negative bacteria (5.7% vs. 15%). Moreover, this study, including approximately 15% to 20% of the total number of cases per year in our country, gave a good estimation of the strains involved in acute postoperative endophthalmitis in France.
The limitations of this study are mainly related to the real-life sampling protocol (i.e., the lack of analysis using one technique because of the limited volume of ocular specimens in a few cases and the bias associated with the second ocular sampling: AH or PPV). Clearly, the rate of positivity of some samples after the initial intravitreous injection of antibiotics may depend on the cause of PPV—particularly the severity of the clinical presentation and probably the virulence of the bacteria involved. The limits of this PCR sequencing technique may stem from lower sensitivity when compared with PCR techniques targeting a specific microorganism, the inability to provide identification at the species level for some taxons, and the cost (US $179). However, this study more accurately reflects the usefulness of both techniques if applied to routine practice in patients with acute postcataract endophthalmitis.
In conclusion, this prospective study on a large series of acute postcataract endophthalmitis showed that conventional cultures and eubacterial PCR are complementary. PCR was necessary for the microbiologic diagnosis in 25% of the cases and was sufficient in 61% of the cases. Finally, this study provides data for a modern ocular sample analysis strategy: PCR and cultures on vitreous samples at admission and PCR on pretreated vitreous.
| Appendix 1 |
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Statistics, methodology: François Vandenesch, Gilles Thuret.
Database management: Pierre-Loïc Cornut.
Ophthalmology: University Hospital of Dijon: Pierre-Olivier Lafontaine, Marie Passemard, Catherine Creuzot-Garcher, and Alain Bron; University Hospital of Grenoble: Viviane Moreau-Gaudry, Christophe Chiquet, Karine Palombi, and Jean-Paul Romanet; University Hospital of Lyon (E. Herriot Hospital): Pierre-Loïc Cornut, Frédéric Rouberol, and Philippe Denis; University Hospital of Saint-Etienne: Gilles Thuret and Philippe Gain.
Microbiology: University Hospital of Dijon: André Péchinot and Catherine Neuwirth; University Hospital of Grenoble: Jacques Croizé and Max Maurin; University Hospital of Lyon (E. Herriot Hospital): Gérard Lina and Jérôme Etienne; Hospital of Lyon (Neurocardiologique Hospital): Yvonne Benito, Sandrine Boisset, Anne Tristan, and François Vandenesch; University Hospital of Saint-Etienne: Anne Carricajo and Gérard Aubert.
Mycology: University Hospital of Dijon: Frédéric Dalle and Alain Bonin; University Hospital of Grenoble: Bernadette Lebeau and Hervé Pelloux; University Hospital of Lyon: Frédérique de Montbrison and Stéphane Picot; University Hospital of Saint-Etienne: Hélène Raberin and Roger Tran Manh Sung.
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Submitted for publication October 24, 2007; revised December 11, 2007; accepted March 3, 2008.
Disclosure: C. Chiquet, None; P.-L. Cornut, None; Y. Benito, None; G. Thuret, None; M. Maurin, None; P.-O. Lafontaine, None; A. Pechinot, None; K. Palombi, None; G. Lina, None; A. Bron, None; P. Denis, None; A. Carricajo, None; C. Creuzot, Alcon Laboratories (F), Sanofi-Aventis Laboratories (F); J.-P. Romanet, None; F. Vandenesch, None
The publication costs of this article were defrayed in part by page charge payment. This article must therefore be marked "advertisement" in accordance with 18 U.S.C.
1734 solely to indicate this fact.
Corresponding author: Christophe Chiquet, Department of Ophthalmology, University Hospital, CHU de Grenoble, 38043 Grenoble cedex 09, France; cchiquet{at}chu-grenoble.fr.
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